Gene : Lsat_1_v5_gn_3_101461 L. sativa V8
Defline:  (1 of 2) PTHR33149//PTHR33180//PTHR33180:SF4 - FAMILY NOT NAMED // FAMILY NOT NAMED // PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEIN Genomic Order:  2953
Name:  ? Lsat_1_v5_gn_3_101461 Secondary Identifier:  ? PAC:38920502
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PHOTOALL-PWY Lactuca sativa pathologic  
Lsativa PWY-101 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_101461 0.5kb upstream 0.5kb upstream 2291   true Lsat_1_v8_lg_3: 160995871-160998161 Lactuca sativa
Lsat_1_v5_gn_3_101461 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 160997662-160998161 Lactuca sativa
Lsat_1_v5_gn_3_101461 0.5kb downstream 0.5kb downstream 2291   true Lsat_1_v8_lg_3: 160995371-160997661 Lactuca sativa
Lsat_1_v5_gn_3_101461 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 160995371-160995870 Lactuca sativa
Lsat_1_v5_gn_3_101461 1.0kb upstream 1.0kb upstream 2791   true Lsat_1_v8_lg_3: 160995871-160998661 Lactuca sativa
Lsat_1_v5_gn_3_101461 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 160997662-160998661 Lactuca sativa
Lsat_1_v5_gn_3_101461 1.0kb downstream 1.0kb downstream 2791   true Lsat_1_v8_lg_3: 160994871-160997661 Lactuca sativa
Lsat_1_v5_gn_3_101461 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 160994871-160995870 Lactuca sativa
Lsat_1_v5_gn_3_101461 2.0kb upstream 2.0kb upstream 3791   true Lsat_1_v8_lg_3: 160995871-160999661 Lactuca sativa
Lsat_1_v5_gn_3_101461 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 160997662-160999661 Lactuca sativa
Lsat_1_v5_gn_3_101461 2.0kb downstream 2.0kb downstream 3791   true Lsat_1_v8_lg_3: 160993871-160997661 Lactuca sativa
Lsat_1_v5_gn_3_101461 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 160993871-160995870 Lactuca sativa
Lsat_1_v5_gn_3_101461 5.0kb upstream 5.0kb upstream 6791   true Lsat_1_v8_lg_3: 160995871-161002661 Lactuca sativa
Lsat_1_v5_gn_3_101461 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 160997662-161002661 Lactuca sativa
Lsat_1_v5_gn_3_101461 5.0kb downstream 5.0kb downstream 6791   true Lsat_1_v8_lg_3: 160990871-160997661 Lactuca sativa
Lsat_1_v5_gn_3_101461 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 160990871-160995870 Lactuca sativa
Lsat_1_v5_gn_3_101461 10.0kb upstream 10.0kb upstream 11791   true Lsat_1_v8_lg_3: 160995871-161007661 Lactuca sativa
Lsat_1_v5_gn_3_101461 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 160997662-161007661 Lactuca sativa
Lsat_1_v5_gn_3_101461 10.0kb downstream 10.0kb downstream 11791   true Lsat_1_v8_lg_3: 160985871-160997661 Lactuca sativa
Lsat_1_v5_gn_3_101461 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 160985871-160995870 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121481186 5263 Asterids View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain