Gene : Lsat_1_v5_gn_3_109140 L. sativa V8
Defline:  (1 of 10) PTHR23321//PTHR23321:SF31 - RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR // RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN-RELATED Genomic Order:  3136
Name:  ? Lsat_1_v5_gn_3_109140 Secondary Identifier:  ? PAC:38915220
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa CALVIN-PWY Lactuca sativa pathologic  
Lsativa PHOTOALL-PWY Lactuca sativa pathologic  
Lsativa PWY-5723 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_109140 0.5kb upstream 0.5kb upstream 1529   true Lsat_1_v8_lg_3: 180284191-180285719 Lactuca sativa
Lsat_1_v5_gn_3_109140 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 180285220-180285719 Lactuca sativa
Lsat_1_v5_gn_3_109140 0.5kb downstream 0.5kb downstream 1529   true Lsat_1_v8_lg_3: 180283691-180285219 Lactuca sativa
Lsat_1_v5_gn_3_109140 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 180283691-180284190 Lactuca sativa
Lsat_1_v5_gn_3_109140 1.0kb upstream 1.0kb upstream 2029   true Lsat_1_v8_lg_3: 180284191-180286219 Lactuca sativa
Lsat_1_v5_gn_3_109140 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 180285220-180286219 Lactuca sativa
Lsat_1_v5_gn_3_109140 1.0kb downstream 1.0kb downstream 2029   true Lsat_1_v8_lg_3: 180283191-180285219 Lactuca sativa
Lsat_1_v5_gn_3_109140 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 180283191-180284190 Lactuca sativa
Lsat_1_v5_gn_3_109140 2.0kb upstream 2.0kb upstream 3029   true Lsat_1_v8_lg_3: 180284191-180287219 Lactuca sativa
Lsat_1_v5_gn_3_109140 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 180285220-180287219 Lactuca sativa
Lsat_1_v5_gn_3_109140 2.0kb downstream 2.0kb downstream 3029   true Lsat_1_v8_lg_3: 180282191-180285219 Lactuca sativa
Lsat_1_v5_gn_3_109140 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 180282191-180284190 Lactuca sativa
Lsat_1_v5_gn_3_109140 5.0kb upstream 5.0kb upstream 6029   true Lsat_1_v8_lg_3: 180284191-180290219 Lactuca sativa
Lsat_1_v5_gn_3_109140 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 180285220-180290219 Lactuca sativa
Lsat_1_v5_gn_3_109140 5.0kb downstream 5.0kb downstream 6029   true Lsat_1_v8_lg_3: 180279191-180285219 Lactuca sativa
Lsat_1_v5_gn_3_109140 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 180279191-180284190 Lactuca sativa
Lsat_1_v5_gn_3_109140 10.0kb upstream 10.0kb upstream 11029   true Lsat_1_v8_lg_3: 180284191-180295219 Lactuca sativa
Lsat_1_v5_gn_3_109140 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 180285220-180295219 Lactuca sativa
Lsat_1_v5_gn_3_109140 10.0kb downstream 10.0kb downstream 11029   true Lsat_1_v8_lg_3: 180274191-180285219 Lactuca sativa
Lsat_1_v5_gn_3_109140 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 180274191-180284190 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121454169 5263 Asterids View MSA
123751375 5271 Pentapetalae View MSA
122794662 5272 Eudicot View MSA
122051262 5273 Angiosperm View MSA
121312381 5274 Embryophyte View MSA
123349558 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain