Gene : Lsat_1_v5_gn_3_110460 L. sativa V8
Defline:  (1 of 1) PTHR10257//PTHR10257:SF25//PTHR22808//PTHR22808:SF1 - SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B // SERINE/THREONINE PROTEIN PHOSPHATASE 2A 57 KDA REGULATORY SUBUNIT B' IOTA ISOFORM // NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING // TRNA (CYTOSINE(34)-C(5))-METHYLTRANSFERASE Genomic Order:  3173
Name:  ? Lsat_1_v5_gn_3_110460 Secondary Identifier:  ? PAC:38918885
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6829 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_110460 0.5kb upstream 0.5kb upstream 10800   true Lsat_1_v8_lg_3: 182558246-182569045 Lactuca sativa
Lsat_1_v5_gn_3_110460 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 182568546-182569045 Lactuca sativa
Lsat_1_v5_gn_3_110460 0.5kb downstream 0.5kb downstream 10800   true Lsat_1_v8_lg_3: 182557746-182568545 Lactuca sativa
Lsat_1_v5_gn_3_110460 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 182557746-182558245 Lactuca sativa
Lsat_1_v5_gn_3_110460 1.0kb upstream 1.0kb upstream 11300   true Lsat_1_v8_lg_3: 182558246-182569545 Lactuca sativa
Lsat_1_v5_gn_3_110460 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 182568546-182569545 Lactuca sativa
Lsat_1_v5_gn_3_110460 1.0kb downstream 1.0kb downstream 11300   true Lsat_1_v8_lg_3: 182557246-182568545 Lactuca sativa
Lsat_1_v5_gn_3_110460 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 182557246-182558245 Lactuca sativa
Lsat_1_v5_gn_3_110460 2.0kb upstream 2.0kb upstream 12300   true Lsat_1_v8_lg_3: 182558246-182570545 Lactuca sativa
Lsat_1_v5_gn_3_110460 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 182568546-182570545 Lactuca sativa
Lsat_1_v5_gn_3_110460 2.0kb downstream 2.0kb downstream 12300   true Lsat_1_v8_lg_3: 182556246-182568545 Lactuca sativa
Lsat_1_v5_gn_3_110460 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 182556246-182558245 Lactuca sativa
Lsat_1_v5_gn_3_110460 5.0kb upstream 5.0kb upstream 15300   true Lsat_1_v8_lg_3: 182558246-182573545 Lactuca sativa
Lsat_1_v5_gn_3_110460 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 182568546-182573545 Lactuca sativa
Lsat_1_v5_gn_3_110460 5.0kb downstream 5.0kb downstream 15300   true Lsat_1_v8_lg_3: 182553246-182568545 Lactuca sativa
Lsat_1_v5_gn_3_110460 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 182553246-182558245 Lactuca sativa
Lsat_1_v5_gn_3_110460 10.0kb upstream 10.0kb upstream 20300   true Lsat_1_v8_lg_3: 182558246-182578545 Lactuca sativa
Lsat_1_v5_gn_3_110460 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 182568546-182578545 Lactuca sativa
Lsat_1_v5_gn_3_110460 10.0kb downstream 10.0kb downstream 20300   true Lsat_1_v8_lg_3: 182548246-182568545 Lactuca sativa
Lsat_1_v5_gn_3_110460 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 182548246-182558245 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026563 5273 Angiosperm View MSA
121475279 5263 Asterids View MSA
123744621 5271 Pentapetalae View MSA
122789536 5272 Eudicot View MSA
121296391 5274 Embryophyte View MSA
123334563 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain