Gene : Lsat_1_v5_gn_3_3161 L. sativa V8
Defline:  (1 of 2) PTHR11638//PTHR11638:SF105 - ATP-DEPENDENT CLP PROTEASE // SUBFAMILY NOT NAMED Genomic Order:  114
Name:  ? Lsat_1_v5_gn_3_3161 Secondary Identifier:  ? PAC:38920995
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_3161 0.5kb upstream 0.5kb upstream 2133   true Lsat_1_v8_lg_3: 6451895-6454027 Lactuca sativa
Lsat_1_v5_gn_3_3161 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 6453528-6454027 Lactuca sativa
Lsat_1_v5_gn_3_3161 0.5kb downstream 0.5kb downstream 2133   true Lsat_1_v8_lg_3: 6451395-6453527 Lactuca sativa
Lsat_1_v5_gn_3_3161 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 6451395-6451894 Lactuca sativa
Lsat_1_v5_gn_3_3161 1.0kb upstream 1.0kb upstream 2633   true Lsat_1_v8_lg_3: 6451895-6454527 Lactuca sativa
Lsat_1_v5_gn_3_3161 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 6453528-6454527 Lactuca sativa
Lsat_1_v5_gn_3_3161 1.0kb downstream 1.0kb downstream 2633   true Lsat_1_v8_lg_3: 6450895-6453527 Lactuca sativa
Lsat_1_v5_gn_3_3161 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 6450895-6451894 Lactuca sativa
Lsat_1_v5_gn_3_3161 2.0kb upstream 2.0kb upstream 3633   true Lsat_1_v8_lg_3: 6451895-6455527 Lactuca sativa
Lsat_1_v5_gn_3_3161 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 6453528-6455527 Lactuca sativa
Lsat_1_v5_gn_3_3161 2.0kb downstream 2.0kb downstream 3633   true Lsat_1_v8_lg_3: 6449895-6453527 Lactuca sativa
Lsat_1_v5_gn_3_3161 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 6449895-6451894 Lactuca sativa
Lsat_1_v5_gn_3_3161 5.0kb upstream 5.0kb upstream 6633   true Lsat_1_v8_lg_3: 6451895-6458527 Lactuca sativa
Lsat_1_v5_gn_3_3161 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 6453528-6458527 Lactuca sativa
Lsat_1_v5_gn_3_3161 5.0kb downstream 5.0kb downstream 6633   true Lsat_1_v8_lg_3: 6446895-6453527 Lactuca sativa
Lsat_1_v5_gn_3_3161 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 6446895-6451894 Lactuca sativa
Lsat_1_v5_gn_3_3161 10.0kb upstream 10.0kb upstream 11633   true Lsat_1_v8_lg_3: 6451895-6463527 Lactuca sativa
Lsat_1_v5_gn_3_3161 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 6453528-6463527 Lactuca sativa
Lsat_1_v5_gn_3_3161 10.0kb downstream 10.0kb downstream 11633   true Lsat_1_v8_lg_3: 6441895-6453527 Lactuca sativa
Lsat_1_v5_gn_3_3161 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 6441895-6451894 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467686 5263 Asterids View MSA
123741380 5271 Pentapetalae View MSA
122789129 5272 Eudicot View MSA
122047723 5273 Angiosperm View MSA
121348075 5274 Embryophyte View MSA
123425862 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain