Gene : Lsat_1_v5_gn_3_39221 L. sativa V8
Defline:  (1 of 1) PTHR19957//PTHR19957:SF125//PTHR19957:SF80 - SYNTAXIN // SUBFAMILY NOT NAMED // SYNTAXIN-123-RELATED Genomic Order:  1305
Name:  ? Lsat_1_v5_gn_3_39221 Secondary Identifier:  ? PAC:38916757
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_39221 0.5kb upstream 0.5kb upstream 5447   true Lsat_1_v8_lg_3: 52395211-52400657 Lactuca sativa
Lsat_1_v5_gn_3_39221 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 52400158-52400657 Lactuca sativa
Lsat_1_v5_gn_3_39221 0.5kb downstream 0.5kb downstream 5447   true Lsat_1_v8_lg_3: 52394711-52400157 Lactuca sativa
Lsat_1_v5_gn_3_39221 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 52394711-52395210 Lactuca sativa
Lsat_1_v5_gn_3_39221 1.0kb upstream 1.0kb upstream 5947   true Lsat_1_v8_lg_3: 52395211-52401157 Lactuca sativa
Lsat_1_v5_gn_3_39221 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 52400158-52401157 Lactuca sativa
Lsat_1_v5_gn_3_39221 1.0kb downstream 1.0kb downstream 5947   true Lsat_1_v8_lg_3: 52394211-52400157 Lactuca sativa
Lsat_1_v5_gn_3_39221 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 52394211-52395210 Lactuca sativa
Lsat_1_v5_gn_3_39221 2.0kb upstream 2.0kb upstream 6947   true Lsat_1_v8_lg_3: 52395211-52402157 Lactuca sativa
Lsat_1_v5_gn_3_39221 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 52400158-52402157 Lactuca sativa
Lsat_1_v5_gn_3_39221 2.0kb downstream 2.0kb downstream 6947   true Lsat_1_v8_lg_3: 52393211-52400157 Lactuca sativa
Lsat_1_v5_gn_3_39221 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 52393211-52395210 Lactuca sativa
Lsat_1_v5_gn_3_39221 5.0kb upstream 5.0kb upstream 9947   true Lsat_1_v8_lg_3: 52395211-52405157 Lactuca sativa
Lsat_1_v5_gn_3_39221 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 52400158-52405157 Lactuca sativa
Lsat_1_v5_gn_3_39221 5.0kb downstream 5.0kb downstream 9947   true Lsat_1_v8_lg_3: 52390211-52400157 Lactuca sativa
Lsat_1_v5_gn_3_39221 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 52390211-52395210 Lactuca sativa
Lsat_1_v5_gn_3_39221 10.0kb upstream 10.0kb upstream 14947   true Lsat_1_v8_lg_3: 52395211-52410157 Lactuca sativa
Lsat_1_v5_gn_3_39221 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 52400158-52410157 Lactuca sativa
Lsat_1_v5_gn_3_39221 10.0kb downstream 10.0kb downstream 14947   true Lsat_1_v8_lg_3: 52385211-52400157 Lactuca sativa
Lsat_1_v5_gn_3_39221 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 52385211-52395210 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026460 5273 Angiosperm View MSA
121442857 5263 Asterids Singleton cluster - no MSA
123749787 5271 Pentapetalae View MSA
122794883 5272 Eudicot View MSA
121296342 5274 Embryophyte View MSA
123426167 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain