Gene : Lsat_1_v5_gn_3_47540 L. sativa V8
Defline:  (1 of 2) 2.1.1.142//2.1.1.143 - Cycloartenol 24-C-methyltransferase / Sterol C-methyltransferase // 24-methylenesterol C-methyltransferase / SMT(2) Genomic Order:  1507
Name:  ? Lsat_1_v5_gn_3_47540 Secondary Identifier:  ? PAC:38916691
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-2541 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_47540 0.5kb upstream 0.5kb upstream 1842   true Lsat_1_v8_lg_3: 60171291-60173132 Lactuca sativa
Lsat_1_v5_gn_3_47540 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 60172633-60173132 Lactuca sativa
Lsat_1_v5_gn_3_47540 0.5kb downstream 0.5kb downstream 1842   true Lsat_1_v8_lg_3: 60170791-60172632 Lactuca sativa
Lsat_1_v5_gn_3_47540 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 60170791-60171290 Lactuca sativa
Lsat_1_v5_gn_3_47540 1.0kb upstream 1.0kb upstream 2342   true Lsat_1_v8_lg_3: 60171291-60173632 Lactuca sativa
Lsat_1_v5_gn_3_47540 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 60172633-60173632 Lactuca sativa
Lsat_1_v5_gn_3_47540 1.0kb downstream 1.0kb downstream 2342   true Lsat_1_v8_lg_3: 60170291-60172632 Lactuca sativa
Lsat_1_v5_gn_3_47540 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 60170291-60171290 Lactuca sativa
Lsat_1_v5_gn_3_47540 2.0kb upstream 2.0kb upstream 3342   true Lsat_1_v8_lg_3: 60171291-60174632 Lactuca sativa
Lsat_1_v5_gn_3_47540 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 60172633-60174632 Lactuca sativa
Lsat_1_v5_gn_3_47540 2.0kb downstream 2.0kb downstream 3342   true Lsat_1_v8_lg_3: 60169291-60172632 Lactuca sativa
Lsat_1_v5_gn_3_47540 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 60169291-60171290 Lactuca sativa
Lsat_1_v5_gn_3_47540 5.0kb upstream 5.0kb upstream 6342   true Lsat_1_v8_lg_3: 60171291-60177632 Lactuca sativa
Lsat_1_v5_gn_3_47540 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 60172633-60177632 Lactuca sativa
Lsat_1_v5_gn_3_47540 5.0kb downstream 5.0kb downstream 6342   true Lsat_1_v8_lg_3: 60166291-60172632 Lactuca sativa
Lsat_1_v5_gn_3_47540 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 60166291-60171290 Lactuca sativa
Lsat_1_v5_gn_3_47540 10.0kb upstream 10.0kb upstream 11342   true Lsat_1_v8_lg_3: 60171291-60182632 Lactuca sativa
Lsat_1_v5_gn_3_47540 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 60172633-60182632 Lactuca sativa
Lsat_1_v5_gn_3_47540 10.0kb downstream 10.0kb downstream 11342   true Lsat_1_v8_lg_3: 60161291-60172632 Lactuca sativa
Lsat_1_v5_gn_3_47540 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 60161291-60171290 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470793 5263 Asterids View MSA
123749878 5271 Pentapetalae View MSA
122793633 5272 Eudicot View MSA
122047271 5273 Angiosperm View MSA
121344259 5274 Embryophyte View MSA
123426805 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain