Gene : Lsat_1_v5_gn_3_49920 L. sativa V8
Defline:  (1 of 3) K01490 - AMP deaminase (AMPD) Genomic Order:  1606
Name:  ? Lsat_1_v5_gn_3_49920 Secondary Identifier:  ? PAC:38916399
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6596 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_49920 0.5kb upstream 0.5kb upstream 5746   true Lsat_1_v8_lg_3: 64609594-64615339 Lactuca sativa
Lsat_1_v5_gn_3_49920 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 64614840-64615339 Lactuca sativa
Lsat_1_v5_gn_3_49920 0.5kb downstream 0.5kb downstream 5746   true Lsat_1_v8_lg_3: 64609094-64614839 Lactuca sativa
Lsat_1_v5_gn_3_49920 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 64609094-64609593 Lactuca sativa
Lsat_1_v5_gn_3_49920 1.0kb upstream 1.0kb upstream 6246   true Lsat_1_v8_lg_3: 64609594-64615839 Lactuca sativa
Lsat_1_v5_gn_3_49920 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 64614840-64615839 Lactuca sativa
Lsat_1_v5_gn_3_49920 1.0kb downstream 1.0kb downstream 6246   true Lsat_1_v8_lg_3: 64608594-64614839 Lactuca sativa
Lsat_1_v5_gn_3_49920 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 64608594-64609593 Lactuca sativa
Lsat_1_v5_gn_3_49920 2.0kb upstream 2.0kb upstream 7246   true Lsat_1_v8_lg_3: 64609594-64616839 Lactuca sativa
Lsat_1_v5_gn_3_49920 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 64614840-64616839 Lactuca sativa
Lsat_1_v5_gn_3_49920 2.0kb downstream 2.0kb downstream 7246   true Lsat_1_v8_lg_3: 64607594-64614839 Lactuca sativa
Lsat_1_v5_gn_3_49920 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 64607594-64609593 Lactuca sativa
Lsat_1_v5_gn_3_49920 5.0kb upstream 5.0kb upstream 10246   true Lsat_1_v8_lg_3: 64609594-64619839 Lactuca sativa
Lsat_1_v5_gn_3_49920 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 64614840-64619839 Lactuca sativa
Lsat_1_v5_gn_3_49920 5.0kb downstream 5.0kb downstream 10246   true Lsat_1_v8_lg_3: 64604594-64614839 Lactuca sativa
Lsat_1_v5_gn_3_49920 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 64604594-64609593 Lactuca sativa
Lsat_1_v5_gn_3_49920 10.0kb upstream 10.0kb upstream 15246   true Lsat_1_v8_lg_3: 64609594-64624839 Lactuca sativa
Lsat_1_v5_gn_3_49920 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 64614840-64624839 Lactuca sativa
Lsat_1_v5_gn_3_49920 10.0kb downstream 10.0kb downstream 15246   true Lsat_1_v8_lg_3: 64599594-64614839 Lactuca sativa
Lsat_1_v5_gn_3_49920 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 64599594-64609593 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467360 5263 Asterids View MSA
123742499 5271 Pentapetalae View MSA
122794693 5272 Eudicot View MSA
122051037 5273 Angiosperm View MSA
121312259 5274 Embryophyte View MSA
123428411 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain