Gene : Lsat_1_v5_gn_3_53601 L. sativa V8
Defline:  (1 of 2) PF09011 - HMG-box domain (HMG_box_2) Genomic Order:  1716
Name:  ? Lsat_1_v5_gn_3_53601 Secondary Identifier:  ? PAC:38919044
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_53601 0.5kb upstream 0.5kb upstream 3189   true Lsat_1_v8_lg_3: 69855361-69858549 Lactuca sativa
Lsat_1_v5_gn_3_53601 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 69855361-69855860 Lactuca sativa
Lsat_1_v5_gn_3_53601 0.5kb downstream 0.5kb downstream 3189   true Lsat_1_v8_lg_3: 69855861-69859049 Lactuca sativa
Lsat_1_v5_gn_3_53601 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 69858550-69859049 Lactuca sativa
Lsat_1_v5_gn_3_53601 1.0kb upstream 1.0kb upstream 3689   true Lsat_1_v8_lg_3: 69854861-69858549 Lactuca sativa
Lsat_1_v5_gn_3_53601 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 69854861-69855860 Lactuca sativa
Lsat_1_v5_gn_3_53601 1.0kb downstream 1.0kb downstream 3689   true Lsat_1_v8_lg_3: 69855861-69859549 Lactuca sativa
Lsat_1_v5_gn_3_53601 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 69858550-69859549 Lactuca sativa
Lsat_1_v5_gn_3_53601 2.0kb upstream 2.0kb upstream 4689   true Lsat_1_v8_lg_3: 69853861-69858549 Lactuca sativa
Lsat_1_v5_gn_3_53601 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 69853861-69855860 Lactuca sativa
Lsat_1_v5_gn_3_53601 2.0kb downstream 2.0kb downstream 4689   true Lsat_1_v8_lg_3: 69855861-69860549 Lactuca sativa
Lsat_1_v5_gn_3_53601 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 69858550-69860549 Lactuca sativa
Lsat_1_v5_gn_3_53601 5.0kb upstream 5.0kb upstream 7689   true Lsat_1_v8_lg_3: 69850861-69858549 Lactuca sativa
Lsat_1_v5_gn_3_53601 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 69850861-69855860 Lactuca sativa
Lsat_1_v5_gn_3_53601 5.0kb downstream 5.0kb downstream 7689   true Lsat_1_v8_lg_3: 69855861-69863549 Lactuca sativa
Lsat_1_v5_gn_3_53601 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 69858550-69863549 Lactuca sativa
Lsat_1_v5_gn_3_53601 10.0kb upstream 10.0kb upstream 12689   true Lsat_1_v8_lg_3: 69845861-69858549 Lactuca sativa
Lsat_1_v5_gn_3_53601 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 69845861-69855860 Lactuca sativa
Lsat_1_v5_gn_3_53601 10.0kb downstream 10.0kb downstream 12689   true Lsat_1_v8_lg_3: 69855861-69868549 Lactuca sativa
Lsat_1_v5_gn_3_53601 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 69858550-69868549 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470159 5263 Asterids View MSA
123751442 5271 Pentapetalae View MSA
122787834 5272 Eudicot View MSA
122046803 5273 Angiosperm View MSA
121349155 5274 Embryophyte View MSA
123426058 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain