Gene : Lsat_1_v5_gn_3_58960 L. sativa V8
Defline:  (1 of 2) PTHR11088//PTHR11088:SF27 - TRNA DELTA 2 -ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED // ADENYLATE ISOPENTENYLTRANSFERASE 1, CHLOROPLASTIC-RELATED Genomic Order:  1875
Name:  ? Lsat_1_v5_gn_3_58960 Secondary Identifier:  ? PAC:38916340
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-2681 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_58960 0.5kb upstream 0.5kb upstream 7213   true Lsat_1_v8_lg_3: 75681820-75689032 Lactuca sativa
Lsat_1_v5_gn_3_58960 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 75681820-75682319 Lactuca sativa
Lsat_1_v5_gn_3_58960 0.5kb downstream 0.5kb downstream 7213   true Lsat_1_v8_lg_3: 75682320-75689532 Lactuca sativa
Lsat_1_v5_gn_3_58960 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 75689033-75689532 Lactuca sativa
Lsat_1_v5_gn_3_58960 1.0kb upstream 1.0kb upstream 7713   true Lsat_1_v8_lg_3: 75681320-75689032 Lactuca sativa
Lsat_1_v5_gn_3_58960 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 75681320-75682319 Lactuca sativa
Lsat_1_v5_gn_3_58960 1.0kb downstream 1.0kb downstream 7713   true Lsat_1_v8_lg_3: 75682320-75690032 Lactuca sativa
Lsat_1_v5_gn_3_58960 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 75689033-75690032 Lactuca sativa
Lsat_1_v5_gn_3_58960 2.0kb upstream 2.0kb upstream 8713   true Lsat_1_v8_lg_3: 75680320-75689032 Lactuca sativa
Lsat_1_v5_gn_3_58960 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 75680320-75682319 Lactuca sativa
Lsat_1_v5_gn_3_58960 2.0kb downstream 2.0kb downstream 8713   true Lsat_1_v8_lg_3: 75682320-75691032 Lactuca sativa
Lsat_1_v5_gn_3_58960 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 75689033-75691032 Lactuca sativa
Lsat_1_v5_gn_3_58960 5.0kb upstream 5.0kb upstream 11713   true Lsat_1_v8_lg_3: 75677320-75689032 Lactuca sativa
Lsat_1_v5_gn_3_58960 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 75677320-75682319 Lactuca sativa
Lsat_1_v5_gn_3_58960 5.0kb downstream 5.0kb downstream 11713   true Lsat_1_v8_lg_3: 75682320-75694032 Lactuca sativa
Lsat_1_v5_gn_3_58960 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 75689033-75694032 Lactuca sativa
Lsat_1_v5_gn_3_58960 10.0kb upstream 10.0kb upstream 16713   true Lsat_1_v8_lg_3: 75672320-75689032 Lactuca sativa
Lsat_1_v5_gn_3_58960 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 75672320-75682319 Lactuca sativa
Lsat_1_v5_gn_3_58960 10.0kb downstream 10.0kb downstream 16713   true Lsat_1_v8_lg_3: 75682320-75699032 Lactuca sativa
Lsat_1_v5_gn_3_58960 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 75689033-75699032 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470077 5263 Asterids View MSA
123742682 5271 Pentapetalae View MSA
122792550 5272 Eudicot View MSA
122046326 5273 Angiosperm View MSA
121310589 5274 Embryophyte View MSA
123428607 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain