Gene : Lsat_1_v5_gn_3_63200 L. sativa V8
Defline:  (1 of 4) K01662 - 1-deoxy-D-xylulose-5-phosphate synthase (dxs) Genomic Order:  1992
Name:  ? Lsat_1_v5_gn_3_63200 Secondary Identifier:  ? PAC:38916108
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7560 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_3_63200 0.5kb upstream 0.5kb upstream 4174   true Lsat_1_v8_lg_3: 81346100-81350273 Lactuca sativa
Lsat_1_v5_gn_3_63200 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_3: 81346100-81346599 Lactuca sativa
Lsat_1_v5_gn_3_63200 0.5kb downstream 0.5kb downstream 4174   true Lsat_1_v8_lg_3: 81346600-81350773 Lactuca sativa
Lsat_1_v5_gn_3_63200 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_3: 81350274-81350773 Lactuca sativa
Lsat_1_v5_gn_3_63200 1.0kb upstream 1.0kb upstream 4674   true Lsat_1_v8_lg_3: 81345600-81350273 Lactuca sativa
Lsat_1_v5_gn_3_63200 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_3: 81345600-81346599 Lactuca sativa
Lsat_1_v5_gn_3_63200 1.0kb downstream 1.0kb downstream 4674   true Lsat_1_v8_lg_3: 81346600-81351273 Lactuca sativa
Lsat_1_v5_gn_3_63200 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_3: 81350274-81351273 Lactuca sativa
Lsat_1_v5_gn_3_63200 2.0kb upstream 2.0kb upstream 5674   true Lsat_1_v8_lg_3: 81344600-81350273 Lactuca sativa
Lsat_1_v5_gn_3_63200 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_3: 81344600-81346599 Lactuca sativa
Lsat_1_v5_gn_3_63200 2.0kb downstream 2.0kb downstream 5674   true Lsat_1_v8_lg_3: 81346600-81352273 Lactuca sativa
Lsat_1_v5_gn_3_63200 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_3: 81350274-81352273 Lactuca sativa
Lsat_1_v5_gn_3_63200 5.0kb upstream 5.0kb upstream 8674   true Lsat_1_v8_lg_3: 81341600-81350273 Lactuca sativa
Lsat_1_v5_gn_3_63200 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_3: 81341600-81346599 Lactuca sativa
Lsat_1_v5_gn_3_63200 5.0kb downstream 5.0kb downstream 8674   true Lsat_1_v8_lg_3: 81346600-81355273 Lactuca sativa
Lsat_1_v5_gn_3_63200 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_3: 81350274-81355273 Lactuca sativa
Lsat_1_v5_gn_3_63200 10.0kb upstream 10.0kb upstream 13674   true Lsat_1_v8_lg_3: 81336600-81350273 Lactuca sativa
Lsat_1_v5_gn_3_63200 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_3: 81336600-81346599 Lactuca sativa
Lsat_1_v5_gn_3_63200 10.0kb downstream 10.0kb downstream 13674   true Lsat_1_v8_lg_3: 81346600-81360273 Lactuca sativa
Lsat_1_v5_gn_3_63200 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_3: 81350274-81360273 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121466594 5263 Asterids View MSA
123742318 5271 Pentapetalae View MSA
122794630 5272 Eudicot View MSA
122048955 5273 Angiosperm View MSA
121351194 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain