Gene : Lsat_1_v5_gn_4_133060 L. sativa V8
Defline:  (1 of 1) PTHR23344:SF28 - GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 1 Genomic Order:  3738
Name:  ? Lsat_1_v5_gn_4_133060 Secondary Identifier:  ? PAC:38929487
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7409 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_133060 0.5kb upstream 0.5kb upstream 4196   true Lsat_1_v8_lg_4: 248208333-248212528 Lactuca sativa
Lsat_1_v5_gn_4_133060 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 248208333-248208832 Lactuca sativa
Lsat_1_v5_gn_4_133060 0.5kb downstream 0.5kb downstream 4196   true Lsat_1_v8_lg_4: 248208833-248213028 Lactuca sativa
Lsat_1_v5_gn_4_133060 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 248212529-248213028 Lactuca sativa
Lsat_1_v5_gn_4_133060 1.0kb upstream 1.0kb upstream 4696   true Lsat_1_v8_lg_4: 248207833-248212528 Lactuca sativa
Lsat_1_v5_gn_4_133060 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 248207833-248208832 Lactuca sativa
Lsat_1_v5_gn_4_133060 1.0kb downstream 1.0kb downstream 4696   true Lsat_1_v8_lg_4: 248208833-248213528 Lactuca sativa
Lsat_1_v5_gn_4_133060 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 248212529-248213528 Lactuca sativa
Lsat_1_v5_gn_4_133060 2.0kb upstream 2.0kb upstream 5696   true Lsat_1_v8_lg_4: 248206833-248212528 Lactuca sativa
Lsat_1_v5_gn_4_133060 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 248206833-248208832 Lactuca sativa
Lsat_1_v5_gn_4_133060 2.0kb downstream 2.0kb downstream 5696   true Lsat_1_v8_lg_4: 248208833-248214528 Lactuca sativa
Lsat_1_v5_gn_4_133060 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 248212529-248214528 Lactuca sativa
Lsat_1_v5_gn_4_133060 5.0kb upstream 5.0kb upstream 8696   true Lsat_1_v8_lg_4: 248203833-248212528 Lactuca sativa
Lsat_1_v5_gn_4_133060 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 248203833-248208832 Lactuca sativa
Lsat_1_v5_gn_4_133060 5.0kb downstream 5.0kb downstream 8696   true Lsat_1_v8_lg_4: 248208833-248217528 Lactuca sativa
Lsat_1_v5_gn_4_133060 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 248212529-248217528 Lactuca sativa
Lsat_1_v5_gn_4_133060 10.0kb upstream 10.0kb upstream 13696   true Lsat_1_v8_lg_4: 248198833-248212528 Lactuca sativa
Lsat_1_v5_gn_4_133060 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 248198833-248208832 Lactuca sativa
Lsat_1_v5_gn_4_133060 10.0kb downstream 10.0kb downstream 13696   true Lsat_1_v8_lg_4: 248208833-248222528 Lactuca sativa
Lsat_1_v5_gn_4_133060 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 248212529-248222528 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472069 5263 Asterids View MSA
123739367 5271 Pentapetalae View MSA
122793263 5272 Eudicot View MSA
122047219 5273 Angiosperm View MSA
121349016 5274 Embryophyte View MSA
123427418 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain