Gene : Lsat_1_v5_gn_4_135460 L. sativa V8
Defline:  (1 of 1) PTHR31423//PTHR31423:SF3 - FAMILY NOT NAMED // PROLYL-TRNA SYNTHETASE ASSOCIATED DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  3795
Name:  ? Lsat_1_v5_gn_4_135460 Secondary Identifier:  ? PAC:38930025
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PHOTOALL-PWY Lactuca sativa pathologic  
Lsativa PWY-101 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_135460 0.5kb upstream 0.5kb upstream 5682   true Lsat_1_v8_lg_4: 253842436-253848117 Lactuca sativa
Lsat_1_v5_gn_4_135460 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 253842436-253842935 Lactuca sativa
Lsat_1_v5_gn_4_135460 0.5kb downstream 0.5kb downstream 5682   true Lsat_1_v8_lg_4: 253842936-253848617 Lactuca sativa
Lsat_1_v5_gn_4_135460 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 253848118-253848617 Lactuca sativa
Lsat_1_v5_gn_4_135460 1.0kb upstream 1.0kb upstream 6182   true Lsat_1_v8_lg_4: 253841936-253848117 Lactuca sativa
Lsat_1_v5_gn_4_135460 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 253841936-253842935 Lactuca sativa
Lsat_1_v5_gn_4_135460 1.0kb downstream 1.0kb downstream 6182   true Lsat_1_v8_lg_4: 253842936-253849117 Lactuca sativa
Lsat_1_v5_gn_4_135460 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 253848118-253849117 Lactuca sativa
Lsat_1_v5_gn_4_135460 2.0kb upstream 2.0kb upstream 7182   true Lsat_1_v8_lg_4: 253840936-253848117 Lactuca sativa
Lsat_1_v5_gn_4_135460 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 253840936-253842935 Lactuca sativa
Lsat_1_v5_gn_4_135460 2.0kb downstream 2.0kb downstream 7182   true Lsat_1_v8_lg_4: 253842936-253850117 Lactuca sativa
Lsat_1_v5_gn_4_135460 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 253848118-253850117 Lactuca sativa
Lsat_1_v5_gn_4_135460 5.0kb upstream 5.0kb upstream 10182   true Lsat_1_v8_lg_4: 253837936-253848117 Lactuca sativa
Lsat_1_v5_gn_4_135460 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 253837936-253842935 Lactuca sativa
Lsat_1_v5_gn_4_135460 5.0kb downstream 5.0kb downstream 10182   true Lsat_1_v8_lg_4: 253842936-253853117 Lactuca sativa
Lsat_1_v5_gn_4_135460 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 253848118-253853117 Lactuca sativa
Lsat_1_v5_gn_4_135460 10.0kb upstream 10.0kb upstream 15182   true Lsat_1_v8_lg_4: 253832936-253848117 Lactuca sativa
Lsat_1_v5_gn_4_135460 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 253832936-253842935 Lactuca sativa
Lsat_1_v5_gn_4_135460 10.0kb downstream 10.0kb downstream 15182   true Lsat_1_v8_lg_4: 253842936-253858117 Lactuca sativa
Lsat_1_v5_gn_4_135460 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 253848118-253858117 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121475455 5263 Asterids View MSA
123736377 5271 Pentapetalae View MSA
122789736 5272 Eudicot View MSA
122045268 5273 Angiosperm View MSA
121348045 5274 Embryophyte View MSA
123425543 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain