Gene : Lsat_1_v5_gn_4_140321 L. sativa V8
Defline:  (1 of 1) PTHR21089//PTHR21089:SF10 - SHIKIMATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  3967
Name:  ? Lsat_1_v5_gn_4_140321 Secondary Identifier:  ? PAC:38931254
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa ARO-PWY Lactuca sativa pathologic  
Lsativa PWY-6163 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_140321 0.5kb upstream 0.5kb upstream 7663   true Lsat_1_v8_lg_4: 274175017-274182679 Lactuca sativa
Lsat_1_v5_gn_4_140321 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 274175017-274175516 Lactuca sativa
Lsat_1_v5_gn_4_140321 0.5kb downstream 0.5kb downstream 7663   true Lsat_1_v8_lg_4: 274175517-274183179 Lactuca sativa
Lsat_1_v5_gn_4_140321 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 274182680-274183179 Lactuca sativa
Lsat_1_v5_gn_4_140321 1.0kb upstream 1.0kb upstream 8163   true Lsat_1_v8_lg_4: 274174517-274182679 Lactuca sativa
Lsat_1_v5_gn_4_140321 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 274174517-274175516 Lactuca sativa
Lsat_1_v5_gn_4_140321 1.0kb downstream 1.0kb downstream 8163   true Lsat_1_v8_lg_4: 274175517-274183679 Lactuca sativa
Lsat_1_v5_gn_4_140321 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 274182680-274183679 Lactuca sativa
Lsat_1_v5_gn_4_140321 2.0kb upstream 2.0kb upstream 9163   true Lsat_1_v8_lg_4: 274173517-274182679 Lactuca sativa
Lsat_1_v5_gn_4_140321 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 274173517-274175516 Lactuca sativa
Lsat_1_v5_gn_4_140321 2.0kb downstream 2.0kb downstream 9163   true Lsat_1_v8_lg_4: 274175517-274184679 Lactuca sativa
Lsat_1_v5_gn_4_140321 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 274182680-274184679 Lactuca sativa
Lsat_1_v5_gn_4_140321 5.0kb upstream 5.0kb upstream 12163   true Lsat_1_v8_lg_4: 274170517-274182679 Lactuca sativa
Lsat_1_v5_gn_4_140321 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 274170517-274175516 Lactuca sativa
Lsat_1_v5_gn_4_140321 5.0kb downstream 5.0kb downstream 12163   true Lsat_1_v8_lg_4: 274175517-274187679 Lactuca sativa
Lsat_1_v5_gn_4_140321 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 274182680-274187679 Lactuca sativa
Lsat_1_v5_gn_4_140321 10.0kb upstream 10.0kb upstream 17163   true Lsat_1_v8_lg_4: 274165517-274182679 Lactuca sativa
Lsat_1_v5_gn_4_140321 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 274165517-274175516 Lactuca sativa
Lsat_1_v5_gn_4_140321 10.0kb downstream 10.0kb downstream 17163   true Lsat_1_v8_lg_4: 274175517-274192679 Lactuca sativa
Lsat_1_v5_gn_4_140321 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 274182680-274192679 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791917 5273 Angiosperm View MSA
121478172 5263 Asterids View MSA
123749206 5271 Pentapetalae View MSA
122795293 5272 Eudicot View MSA
121063186 5274 Embryophyte View MSA
123102956 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain