Gene : Lsat_1_v5_gn_4_183301 L. sativa V8
Defline:  (1 of 1) PTHR11822:SF5 - ISOCITRATE DEHYDROGENASE [NADP], CHLOROPLASTIC/MITOCHONDRIAL Genomic Order:  5138
Name:  ? Lsat_1_v5_gn_4_183301 Secondary Identifier:  ? PAC:38929382
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6549 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_183301 0.5kb upstream 0.5kb upstream 4490   true Lsat_1_v8_lg_4: 372336463-372340952 Lactuca sativa
Lsat_1_v5_gn_4_183301 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 372340453-372340952 Lactuca sativa
Lsat_1_v5_gn_4_183301 0.5kb downstream 0.5kb downstream 4490   true Lsat_1_v8_lg_4: 372335963-372340452 Lactuca sativa
Lsat_1_v5_gn_4_183301 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 372335963-372336462 Lactuca sativa
Lsat_1_v5_gn_4_183301 1.0kb upstream 1.0kb upstream 4990   true Lsat_1_v8_lg_4: 372336463-372341452 Lactuca sativa
Lsat_1_v5_gn_4_183301 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 372340453-372341452 Lactuca sativa
Lsat_1_v5_gn_4_183301 1.0kb downstream 1.0kb downstream 4990   true Lsat_1_v8_lg_4: 372335463-372340452 Lactuca sativa
Lsat_1_v5_gn_4_183301 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 372335463-372336462 Lactuca sativa
Lsat_1_v5_gn_4_183301 2.0kb upstream 2.0kb upstream 5990   true Lsat_1_v8_lg_4: 372336463-372342452 Lactuca sativa
Lsat_1_v5_gn_4_183301 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 372340453-372342452 Lactuca sativa
Lsat_1_v5_gn_4_183301 2.0kb downstream 2.0kb downstream 5990   true Lsat_1_v8_lg_4: 372334463-372340452 Lactuca sativa
Lsat_1_v5_gn_4_183301 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 372334463-372336462 Lactuca sativa
Lsat_1_v5_gn_4_183301 5.0kb upstream 5.0kb upstream 8990   true Lsat_1_v8_lg_4: 372336463-372345452 Lactuca sativa
Lsat_1_v5_gn_4_183301 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 372340453-372345452 Lactuca sativa
Lsat_1_v5_gn_4_183301 5.0kb downstream 5.0kb downstream 8990   true Lsat_1_v8_lg_4: 372331463-372340452 Lactuca sativa
Lsat_1_v5_gn_4_183301 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 372331463-372336462 Lactuca sativa
Lsat_1_v5_gn_4_183301 10.0kb upstream 10.0kb upstream 13990   true Lsat_1_v8_lg_4: 372336463-372350452 Lactuca sativa
Lsat_1_v5_gn_4_183301 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 372340453-372350452 Lactuca sativa
Lsat_1_v5_gn_4_183301 10.0kb downstream 10.0kb downstream 13990   true Lsat_1_v8_lg_4: 372326463-372340452 Lactuca sativa
Lsat_1_v5_gn_4_183301 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 372326463-372336462 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041513 5273 Angiosperm View MSA
121474370 5263 Asterids View MSA
123740516 5271 Pentapetalae View MSA
122791819 5272 Eudicot View MSA
121349846 5274 Embryophyte View MSA
123426624 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain