Gene : Lsat_1_v5_gn_4_183181 L. sativa V8

Defline:  (1 of 1) 2.1.1.220 - tRNA (adenine(58)-N(1))-methyltransferase / tRNA m(1)A(58) methyltransferase Genomic Order:  5133
Name:  ? Lsat_1_v5_gn_4_183181 Secondary Identifier:  ? PAC:38934807

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6829 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_183181 0.5kb upstream 0.5kb upstream 2748   true Lsat_1_v8_lg_4: 372229928-372232675 Lactuca sativa
Lsat_1_v5_gn_4_183181 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 372232176-372232675 Lactuca sativa
Lsat_1_v5_gn_4_183181 0.5kb downstream 0.5kb downstream 2748   true Lsat_1_v8_lg_4: 372229428-372232175 Lactuca sativa
Lsat_1_v5_gn_4_183181 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 372229428-372229927 Lactuca sativa
Lsat_1_v5_gn_4_183181 1.0kb upstream 1.0kb upstream 3248   true Lsat_1_v8_lg_4: 372229928-372233175 Lactuca sativa
Lsat_1_v5_gn_4_183181 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 372232176-372233175 Lactuca sativa
Lsat_1_v5_gn_4_183181 1.0kb downstream 1.0kb downstream 3248   true Lsat_1_v8_lg_4: 372228928-372232175 Lactuca sativa
Lsat_1_v5_gn_4_183181 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 372228928-372229927 Lactuca sativa
Lsat_1_v5_gn_4_183181 2.0kb upstream 2.0kb upstream 4248   true Lsat_1_v8_lg_4: 372229928-372234175 Lactuca sativa
Lsat_1_v5_gn_4_183181 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 372232176-372234175 Lactuca sativa
Lsat_1_v5_gn_4_183181 2.0kb downstream 2.0kb downstream 4248   true Lsat_1_v8_lg_4: 372227928-372232175 Lactuca sativa
Lsat_1_v5_gn_4_183181 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 372227928-372229927 Lactuca sativa
Lsat_1_v5_gn_4_183181 5.0kb upstream 5.0kb upstream 7248   true Lsat_1_v8_lg_4: 372229928-372237175 Lactuca sativa
Lsat_1_v5_gn_4_183181 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 372232176-372237175 Lactuca sativa
Lsat_1_v5_gn_4_183181 5.0kb downstream 5.0kb downstream 7248   true Lsat_1_v8_lg_4: 372224928-372232175 Lactuca sativa
Lsat_1_v5_gn_4_183181 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 372224928-372229927 Lactuca sativa
Lsat_1_v5_gn_4_183181 10.0kb upstream 10.0kb upstream 12248   true Lsat_1_v8_lg_4: 372229928-372242175 Lactuca sativa
Lsat_1_v5_gn_4_183181 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 372232176-372242175 Lactuca sativa
Lsat_1_v5_gn_4_183181 10.0kb downstream 10.0kb downstream 12248   true Lsat_1_v8_lg_4: 372219928-372232175 Lactuca sativa
Lsat_1_v5_gn_4_183181 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 372219928-372229927 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473703 5263 Asterids View MSA
123740177 5271 Pentapetalae View MSA
122793445 5272 Eudicot View MSA
122045272 5273 Angiosperm View MSA
121345508 5274 Embryophyte View MSA
123423922 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain