Gene : Lsat_1_v5_gn_4_156361 L. sativa V8
Defline:  (1 of 1) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  4432
Name:  ? Lsat_1_v5_gn_4_156361 Secondary Identifier:  ? PAC:38928414
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa GLYSYN-PWY Lactuca sativa pathologic  
Lsativa PWY-2161 Lactuca sativa pathologic  
Lsativa PWY-3841 Lactuca sativa pathologic  
Lsativa SER-GLYSYN-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_156361 0.5kb upstream 0.5kb upstream 6316   true Lsat_1_v8_lg_4: 312271922-312278237 Lactuca sativa
Lsat_1_v5_gn_4_156361 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 312271922-312272421 Lactuca sativa
Lsat_1_v5_gn_4_156361 0.5kb downstream 0.5kb downstream 6316   true Lsat_1_v8_lg_4: 312272422-312278737 Lactuca sativa
Lsat_1_v5_gn_4_156361 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 312278238-312278737 Lactuca sativa
Lsat_1_v5_gn_4_156361 1.0kb upstream 1.0kb upstream 6816   true Lsat_1_v8_lg_4: 312271422-312278237 Lactuca sativa
Lsat_1_v5_gn_4_156361 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 312271422-312272421 Lactuca sativa
Lsat_1_v5_gn_4_156361 1.0kb downstream 1.0kb downstream 6816   true Lsat_1_v8_lg_4: 312272422-312279237 Lactuca sativa
Lsat_1_v5_gn_4_156361 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 312278238-312279237 Lactuca sativa
Lsat_1_v5_gn_4_156361 2.0kb upstream 2.0kb upstream 7816   true Lsat_1_v8_lg_4: 312270422-312278237 Lactuca sativa
Lsat_1_v5_gn_4_156361 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 312270422-312272421 Lactuca sativa
Lsat_1_v5_gn_4_156361 2.0kb downstream 2.0kb downstream 7816   true Lsat_1_v8_lg_4: 312272422-312280237 Lactuca sativa
Lsat_1_v5_gn_4_156361 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 312278238-312280237 Lactuca sativa
Lsat_1_v5_gn_4_156361 5.0kb upstream 5.0kb upstream 10816   true Lsat_1_v8_lg_4: 312267422-312278237 Lactuca sativa
Lsat_1_v5_gn_4_156361 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 312267422-312272421 Lactuca sativa
Lsat_1_v5_gn_4_156361 5.0kb downstream 5.0kb downstream 10816   true Lsat_1_v8_lg_4: 312272422-312283237 Lactuca sativa
Lsat_1_v5_gn_4_156361 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 312278238-312283237 Lactuca sativa
Lsat_1_v5_gn_4_156361 10.0kb upstream 10.0kb upstream 15816   true Lsat_1_v8_lg_4: 312262422-312278237 Lactuca sativa
Lsat_1_v5_gn_4_156361 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 312262422-312272421 Lactuca sativa
Lsat_1_v5_gn_4_156361 10.0kb downstream 10.0kb downstream 15816   true Lsat_1_v8_lg_4: 312272422-312288237 Lactuca sativa
Lsat_1_v5_gn_4_156361 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 312278238-312288237 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467814 5263 Asterids View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain