Gene : Lsat_1_v5_gn_4_160580 L. sativa V8
Defline:  (1 of 3) PTHR31311//PTHR31311:SF3 - FAMILY NOT NAMED // GLYCOSYLTRANSFERASE 6-RELATED Genomic Order:  4507
Name:  ? Lsat_1_v5_gn_4_160580 Secondary Identifier:  ? PAC:38928090
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-5936 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_160580 0.5kb upstream 0.5kb upstream 2201   true Lsat_1_v8_lg_4: 322597632-322599832 Lactuca sativa
Lsat_1_v5_gn_4_160580 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 322599333-322599832 Lactuca sativa
Lsat_1_v5_gn_4_160580 0.5kb downstream 0.5kb downstream 2201   true Lsat_1_v8_lg_4: 322597132-322599332 Lactuca sativa
Lsat_1_v5_gn_4_160580 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 322597132-322597631 Lactuca sativa
Lsat_1_v5_gn_4_160580 1.0kb upstream 1.0kb upstream 2701   true Lsat_1_v8_lg_4: 322597632-322600332 Lactuca sativa
Lsat_1_v5_gn_4_160580 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 322599333-322600332 Lactuca sativa
Lsat_1_v5_gn_4_160580 1.0kb downstream 1.0kb downstream 2701   true Lsat_1_v8_lg_4: 322596632-322599332 Lactuca sativa
Lsat_1_v5_gn_4_160580 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 322596632-322597631 Lactuca sativa
Lsat_1_v5_gn_4_160580 2.0kb upstream 2.0kb upstream 3701   true Lsat_1_v8_lg_4: 322597632-322601332 Lactuca sativa
Lsat_1_v5_gn_4_160580 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 322599333-322601332 Lactuca sativa
Lsat_1_v5_gn_4_160580 2.0kb downstream 2.0kb downstream 3701   true Lsat_1_v8_lg_4: 322595632-322599332 Lactuca sativa
Lsat_1_v5_gn_4_160580 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 322595632-322597631 Lactuca sativa
Lsat_1_v5_gn_4_160580 5.0kb upstream 5.0kb upstream 6701   true Lsat_1_v8_lg_4: 322597632-322604332 Lactuca sativa
Lsat_1_v5_gn_4_160580 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 322599333-322604332 Lactuca sativa
Lsat_1_v5_gn_4_160580 5.0kb downstream 5.0kb downstream 6701   true Lsat_1_v8_lg_4: 322592632-322599332 Lactuca sativa
Lsat_1_v5_gn_4_160580 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 322592632-322597631 Lactuca sativa
Lsat_1_v5_gn_4_160580 10.0kb upstream 10.0kb upstream 11701   true Lsat_1_v8_lg_4: 322597632-322609332 Lactuca sativa
Lsat_1_v5_gn_4_160580 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 322599333-322609332 Lactuca sativa
Lsat_1_v5_gn_4_160580 10.0kb downstream 10.0kb downstream 11701   true Lsat_1_v8_lg_4: 322587632-322599332 Lactuca sativa
Lsat_1_v5_gn_4_160580 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 322587632-322597631 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041044 5273 Angiosperm View MSA
121476391 5263 Asterids View MSA
123745893 5271 Pentapetalae View MSA
122788546 5272 Eudicot View MSA
121352143 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain