Gene : Lsat_1_v5_gn_4_16241 L. sativa V8
Defline:  (1 of 1) PTHR10890//PTHR10890:SF10 - CYSTEINYL-TRNA SYNTHETASE // CYSTEINE-TRNA LIGASE Genomic Order:  454
Name:  ? Lsat_1_v5_gn_4_16241 Secondary Identifier:  ? PAC:38928642
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa TRNA-CHARGING-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_16241 0.5kb upstream 0.5kb upstream 4203   true Lsat_1_v8_lg_4: 23232866-23237068 Lactuca sativa
Lsat_1_v5_gn_4_16241 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 23236569-23237068 Lactuca sativa
Lsat_1_v5_gn_4_16241 0.5kb downstream 0.5kb downstream 4203   true Lsat_1_v8_lg_4: 23232366-23236568 Lactuca sativa
Lsat_1_v5_gn_4_16241 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 23232366-23232865 Lactuca sativa
Lsat_1_v5_gn_4_16241 1.0kb upstream 1.0kb upstream 4703   true Lsat_1_v8_lg_4: 23232866-23237568 Lactuca sativa
Lsat_1_v5_gn_4_16241 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 23236569-23237568 Lactuca sativa
Lsat_1_v5_gn_4_16241 1.0kb downstream 1.0kb downstream 4703   true Lsat_1_v8_lg_4: 23231866-23236568 Lactuca sativa
Lsat_1_v5_gn_4_16241 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 23231866-23232865 Lactuca sativa
Lsat_1_v5_gn_4_16241 2.0kb upstream 2.0kb upstream 5703   true Lsat_1_v8_lg_4: 23232866-23238568 Lactuca sativa
Lsat_1_v5_gn_4_16241 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 23236569-23238568 Lactuca sativa
Lsat_1_v5_gn_4_16241 2.0kb downstream 2.0kb downstream 5703   true Lsat_1_v8_lg_4: 23230866-23236568 Lactuca sativa
Lsat_1_v5_gn_4_16241 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 23230866-23232865 Lactuca sativa
Lsat_1_v5_gn_4_16241 5.0kb upstream 5.0kb upstream 8703   true Lsat_1_v8_lg_4: 23232866-23241568 Lactuca sativa
Lsat_1_v5_gn_4_16241 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 23236569-23241568 Lactuca sativa
Lsat_1_v5_gn_4_16241 5.0kb downstream 5.0kb downstream 8703   true Lsat_1_v8_lg_4: 23227866-23236568 Lactuca sativa
Lsat_1_v5_gn_4_16241 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 23227866-23232865 Lactuca sativa
Lsat_1_v5_gn_4_16241 10.0kb upstream 10.0kb upstream 13703   true Lsat_1_v8_lg_4: 23232866-23246568 Lactuca sativa
Lsat_1_v5_gn_4_16241 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 23236569-23246568 Lactuca sativa
Lsat_1_v5_gn_4_16241 10.0kb downstream 10.0kb downstream 13703   true Lsat_1_v8_lg_4: 23222866-23236568 Lactuca sativa
Lsat_1_v5_gn_4_16241 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 23222866-23232865 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479250 5263 Asterids View MSA
123736819 5271 Pentapetalae View MSA
122791424 5272 Eudicot View MSA
122050932 5273 Angiosperm View MSA
121350340 5274 Embryophyte View MSA
123427761 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain