Gene : Lsat_1_v5_gn_4_47080 L. sativa V8
Defline:  (1 of 1) PTHR11945//PTHR11945:SF150//PTHR11945:SF215 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1415
Name:  ? Lsat_1_v5_gn_4_47080 Secondary Identifier:  ? PAC:38927993
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_47080 0.5kb upstream 0.5kb upstream 14481   true Lsat_1_v8_lg_4: 69307973-69322453 Lactuca sativa
Lsat_1_v5_gn_4_47080 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 69321954-69322453 Lactuca sativa
Lsat_1_v5_gn_4_47080 0.5kb downstream 0.5kb downstream 14481   true Lsat_1_v8_lg_4: 69307473-69321953 Lactuca sativa
Lsat_1_v5_gn_4_47080 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 69307473-69307972 Lactuca sativa
Lsat_1_v5_gn_4_47080 1.0kb upstream 1.0kb upstream 14981   true Lsat_1_v8_lg_4: 69307973-69322953 Lactuca sativa
Lsat_1_v5_gn_4_47080 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 69321954-69322953 Lactuca sativa
Lsat_1_v5_gn_4_47080 1.0kb downstream 1.0kb downstream 14981   true Lsat_1_v8_lg_4: 69306973-69321953 Lactuca sativa
Lsat_1_v5_gn_4_47080 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 69306973-69307972 Lactuca sativa
Lsat_1_v5_gn_4_47080 2.0kb upstream 2.0kb upstream 15981   true Lsat_1_v8_lg_4: 69307973-69323953 Lactuca sativa
Lsat_1_v5_gn_4_47080 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 69321954-69323953 Lactuca sativa
Lsat_1_v5_gn_4_47080 2.0kb downstream 2.0kb downstream 15981   true Lsat_1_v8_lg_4: 69305973-69321953 Lactuca sativa
Lsat_1_v5_gn_4_47080 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 69305973-69307972 Lactuca sativa
Lsat_1_v5_gn_4_47080 5.0kb upstream 5.0kb upstream 18981   true Lsat_1_v8_lg_4: 69307973-69326953 Lactuca sativa
Lsat_1_v5_gn_4_47080 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 69321954-69326953 Lactuca sativa
Lsat_1_v5_gn_4_47080 5.0kb downstream 5.0kb downstream 18981   true Lsat_1_v8_lg_4: 69302973-69321953 Lactuca sativa
Lsat_1_v5_gn_4_47080 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 69302973-69307972 Lactuca sativa
Lsat_1_v5_gn_4_47080 10.0kb upstream 10.0kb upstream 23981   true Lsat_1_v8_lg_4: 69307973-69331953 Lactuca sativa
Lsat_1_v5_gn_4_47080 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 69321954-69331953 Lactuca sativa
Lsat_1_v5_gn_4_47080 10.0kb downstream 10.0kb downstream 23981   true Lsat_1_v8_lg_4: 69297973-69321953 Lactuca sativa
Lsat_1_v5_gn_4_47080 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 69297973-69307972 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474590 5263 Asterids View MSA
123747867 5271 Pentapetalae View MSA
122793842 5272 Eudicot View MSA
122049629 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain