Gene : Lsat_1_v5_gn_4_52780 L. sativa V8
Defline:  (1 of 1) K07456 - DNA mismatch repair protein MutS2 (mutS2) Genomic Order:  1584
Name:  ? Lsat_1_v5_gn_4_52780 Secondary Identifier:  ? PAC:38934663
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_52780 0.5kb upstream 0.5kb upstream 3811   true Lsat_1_v8_lg_4: 79294898-79298708 Lactuca sativa
Lsat_1_v5_gn_4_52780 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 79298209-79298708 Lactuca sativa
Lsat_1_v5_gn_4_52780 0.5kb downstream 0.5kb downstream 3811   true Lsat_1_v8_lg_4: 79294398-79298208 Lactuca sativa
Lsat_1_v5_gn_4_52780 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 79294398-79294897 Lactuca sativa
Lsat_1_v5_gn_4_52780 1.0kb upstream 1.0kb upstream 4311   true Lsat_1_v8_lg_4: 79294898-79299208 Lactuca sativa
Lsat_1_v5_gn_4_52780 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 79298209-79299208 Lactuca sativa
Lsat_1_v5_gn_4_52780 1.0kb downstream 1.0kb downstream 4311   true Lsat_1_v8_lg_4: 79293898-79298208 Lactuca sativa
Lsat_1_v5_gn_4_52780 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 79293898-79294897 Lactuca sativa
Lsat_1_v5_gn_4_52780 2.0kb upstream 2.0kb upstream 5311   true Lsat_1_v8_lg_4: 79294898-79300208 Lactuca sativa
Lsat_1_v5_gn_4_52780 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 79298209-79300208 Lactuca sativa
Lsat_1_v5_gn_4_52780 2.0kb downstream 2.0kb downstream 5311   true Lsat_1_v8_lg_4: 79292898-79298208 Lactuca sativa
Lsat_1_v5_gn_4_52780 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 79292898-79294897 Lactuca sativa
Lsat_1_v5_gn_4_52780 5.0kb upstream 5.0kb upstream 8311   true Lsat_1_v8_lg_4: 79294898-79303208 Lactuca sativa
Lsat_1_v5_gn_4_52780 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 79298209-79303208 Lactuca sativa
Lsat_1_v5_gn_4_52780 5.0kb downstream 5.0kb downstream 8311   true Lsat_1_v8_lg_4: 79289898-79298208 Lactuca sativa
Lsat_1_v5_gn_4_52780 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 79289898-79294897 Lactuca sativa
Lsat_1_v5_gn_4_52780 10.0kb upstream 10.0kb upstream 13311   true Lsat_1_v8_lg_4: 79294898-79308208 Lactuca sativa
Lsat_1_v5_gn_4_52780 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 79298209-79308208 Lactuca sativa
Lsat_1_v5_gn_4_52780 10.0kb downstream 10.0kb downstream 13311   true Lsat_1_v8_lg_4: 79284898-79298208 Lactuca sativa
Lsat_1_v5_gn_4_52780 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 79284898-79294897 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121466645 5263 Asterids View MSA
123739589 5271 Pentapetalae View MSA
122790305 5272 Eudicot View MSA
122044988 5273 Angiosperm View MSA
121346721 5274 Embryophyte View MSA
123426571 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain