Gene : Lsat_1_v5_gn_4_57180 L. sativa V8
Defline:  (1 of 2) K04718 - sphingosine kinase (SPHK) Genomic Order:  1656
Name:  ? Lsat_1_v5_gn_4_57180 Secondary Identifier:  ? PAC:38935267
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-5129 Lactuca sativa pathologic  
Lsativa PWY-6483 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_57180 0.5kb upstream 0.5kb upstream 3490   true Lsat_1_v8_lg_4: 85440428-85443917 Lactuca sativa
Lsat_1_v5_gn_4_57180 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 85443418-85443917 Lactuca sativa
Lsat_1_v5_gn_4_57180 0.5kb downstream 0.5kb downstream 3490   true Lsat_1_v8_lg_4: 85439928-85443417 Lactuca sativa
Lsat_1_v5_gn_4_57180 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 85439928-85440427 Lactuca sativa
Lsat_1_v5_gn_4_57180 1.0kb upstream 1.0kb upstream 3990   true Lsat_1_v8_lg_4: 85440428-85444417 Lactuca sativa
Lsat_1_v5_gn_4_57180 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 85443418-85444417 Lactuca sativa
Lsat_1_v5_gn_4_57180 1.0kb downstream 1.0kb downstream 3990   true Lsat_1_v8_lg_4: 85439428-85443417 Lactuca sativa
Lsat_1_v5_gn_4_57180 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 85439428-85440427 Lactuca sativa
Lsat_1_v5_gn_4_57180 2.0kb upstream 2.0kb upstream 4990   true Lsat_1_v8_lg_4: 85440428-85445417 Lactuca sativa
Lsat_1_v5_gn_4_57180 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 85443418-85445417 Lactuca sativa
Lsat_1_v5_gn_4_57180 2.0kb downstream 2.0kb downstream 4990   true Lsat_1_v8_lg_4: 85438428-85443417 Lactuca sativa
Lsat_1_v5_gn_4_57180 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 85438428-85440427 Lactuca sativa
Lsat_1_v5_gn_4_57180 5.0kb upstream 5.0kb upstream 7990   true Lsat_1_v8_lg_4: 85440428-85448417 Lactuca sativa
Lsat_1_v5_gn_4_57180 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 85443418-85448417 Lactuca sativa
Lsat_1_v5_gn_4_57180 5.0kb downstream 5.0kb downstream 7990   true Lsat_1_v8_lg_4: 85435428-85443417 Lactuca sativa
Lsat_1_v5_gn_4_57180 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 85435428-85440427 Lactuca sativa
Lsat_1_v5_gn_4_57180 10.0kb upstream 10.0kb upstream 12990   true Lsat_1_v8_lg_4: 85440428-85453417 Lactuca sativa
Lsat_1_v5_gn_4_57180 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 85443418-85453417 Lactuca sativa
Lsat_1_v5_gn_4_57180 10.0kb downstream 10.0kb downstream 12990   true Lsat_1_v8_lg_4: 85430428-85443417 Lactuca sativa
Lsat_1_v5_gn_4_57180 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 85430428-85440427 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121481074 5263 Asterids View MSA
123737091 5271 Pentapetalae View MSA
122793625 5272 Eudicot View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain