Gene : Lsat_1_v5_gn_4_29381 L. sativa V8
Defline:  (1 of 2) PTHR11624:SF76 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA-2, CHLOROPLASTIC-RELATED Genomic Order:  850
Name:  ? Lsat_1_v5_gn_4_29381 Secondary Identifier:  ? PAC:38929402
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-5173 Lactuca sativa pathologic  
Lsativa PWY-5464 Lactuca sativa pathologic  
Lsativa PYRUVDEHYD-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_29381 0.5kb upstream 0.5kb upstream 2513   true Lsat_1_v8_lg_4: 42409694-42412206 Lactuca sativa
Lsat_1_v5_gn_4_29381 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 42409694-42410193 Lactuca sativa
Lsat_1_v5_gn_4_29381 0.5kb downstream 0.5kb downstream 2513   true Lsat_1_v8_lg_4: 42410194-42412706 Lactuca sativa
Lsat_1_v5_gn_4_29381 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 42412207-42412706 Lactuca sativa
Lsat_1_v5_gn_4_29381 1.0kb upstream 1.0kb upstream 3013   true Lsat_1_v8_lg_4: 42409194-42412206 Lactuca sativa
Lsat_1_v5_gn_4_29381 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 42409194-42410193 Lactuca sativa
Lsat_1_v5_gn_4_29381 1.0kb downstream 1.0kb downstream 3013   true Lsat_1_v8_lg_4: 42410194-42413206 Lactuca sativa
Lsat_1_v5_gn_4_29381 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 42412207-42413206 Lactuca sativa
Lsat_1_v5_gn_4_29381 2.0kb upstream 2.0kb upstream 4013   true Lsat_1_v8_lg_4: 42408194-42412206 Lactuca sativa
Lsat_1_v5_gn_4_29381 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 42408194-42410193 Lactuca sativa
Lsat_1_v5_gn_4_29381 2.0kb downstream 2.0kb downstream 4013   true Lsat_1_v8_lg_4: 42410194-42414206 Lactuca sativa
Lsat_1_v5_gn_4_29381 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 42412207-42414206 Lactuca sativa
Lsat_1_v5_gn_4_29381 5.0kb upstream 5.0kb upstream 7013   true Lsat_1_v8_lg_4: 42405194-42412206 Lactuca sativa
Lsat_1_v5_gn_4_29381 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 42405194-42410193 Lactuca sativa
Lsat_1_v5_gn_4_29381 5.0kb downstream 5.0kb downstream 7013   true Lsat_1_v8_lg_4: 42410194-42417206 Lactuca sativa
Lsat_1_v5_gn_4_29381 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 42412207-42417206 Lactuca sativa
Lsat_1_v5_gn_4_29381 10.0kb upstream 10.0kb upstream 12013   true Lsat_1_v8_lg_4: 42400194-42412206 Lactuca sativa
Lsat_1_v5_gn_4_29381 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 42400194-42410193 Lactuca sativa
Lsat_1_v5_gn_4_29381 10.0kb downstream 10.0kb downstream 12013   true Lsat_1_v8_lg_4: 42410194-42422206 Lactuca sativa
Lsat_1_v5_gn_4_29381 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 42412207-42422206 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121475801 5263 Asterids View MSA
123741192 5271 Pentapetalae View MSA
122797029 5272 Eudicot View MSA
122045305 5273 Angiosperm View MSA
121346397 5274 Embryophyte View MSA
123428672 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain