Gene : Lsat_1_v5_gn_4_29681 L. sativa V8
Defline:  (1 of 1) K00819 - ornithine--oxo-acid transaminase (E2.6.1.13, rocD) Genomic Order:  840
Name:  ? Lsat_1_v5_gn_4_29681 Secondary Identifier:  ? PAC:38929553
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa ARGASEDEG-PWY Lactuca sativa pathologic  
Lsativa ARGININE-SYN4-PWY Lactuca sativa pathologic  
Lsativa ARG-PRO-PWY Lactuca sativa pathologic  
Lsativa CITRULBIO-PWY Lactuca sativa pathologic  
Lsativa PWY-3341 Lactuca sativa pathologic  
Lsativa PWY-6922 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_29681 0.5kb upstream 0.5kb upstream 3654   true Lsat_1_v8_lg_4: 41943792-41947445 Lactuca sativa
Lsat_1_v5_gn_4_29681 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 41943792-41944291 Lactuca sativa
Lsat_1_v5_gn_4_29681 0.5kb downstream 0.5kb downstream 3654   true Lsat_1_v8_lg_4: 41944292-41947945 Lactuca sativa
Lsat_1_v5_gn_4_29681 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 41947446-41947945 Lactuca sativa
Lsat_1_v5_gn_4_29681 1.0kb upstream 1.0kb upstream 4154   true Lsat_1_v8_lg_4: 41943292-41947445 Lactuca sativa
Lsat_1_v5_gn_4_29681 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 41943292-41944291 Lactuca sativa
Lsat_1_v5_gn_4_29681 1.0kb downstream 1.0kb downstream 4154   true Lsat_1_v8_lg_4: 41944292-41948445 Lactuca sativa
Lsat_1_v5_gn_4_29681 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 41947446-41948445 Lactuca sativa
Lsat_1_v5_gn_4_29681 2.0kb upstream 2.0kb upstream 5154   true Lsat_1_v8_lg_4: 41942292-41947445 Lactuca sativa
Lsat_1_v5_gn_4_29681 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 41942292-41944291 Lactuca sativa
Lsat_1_v5_gn_4_29681 2.0kb downstream 2.0kb downstream 5154   true Lsat_1_v8_lg_4: 41944292-41949445 Lactuca sativa
Lsat_1_v5_gn_4_29681 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 41947446-41949445 Lactuca sativa
Lsat_1_v5_gn_4_29681 5.0kb upstream 5.0kb upstream 8154   true Lsat_1_v8_lg_4: 41939292-41947445 Lactuca sativa
Lsat_1_v5_gn_4_29681 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 41939292-41944291 Lactuca sativa
Lsat_1_v5_gn_4_29681 5.0kb downstream 5.0kb downstream 8154   true Lsat_1_v8_lg_4: 41944292-41952445 Lactuca sativa
Lsat_1_v5_gn_4_29681 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 41947446-41952445 Lactuca sativa
Lsat_1_v5_gn_4_29681 10.0kb upstream 10.0kb upstream 13154   true Lsat_1_v8_lg_4: 41934292-41947445 Lactuca sativa
Lsat_1_v5_gn_4_29681 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 41934292-41944291 Lactuca sativa
Lsat_1_v5_gn_4_29681 10.0kb downstream 10.0kb downstream 13154   true Lsat_1_v8_lg_4: 41944292-41957445 Lactuca sativa
Lsat_1_v5_gn_4_29681 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 41947446-41957445 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473907 5263 Asterids View MSA
123747705 5271 Pentapetalae View MSA
122789437 5272 Eudicot View MSA
122044834 5273 Angiosperm View MSA
121345718 5274 Embryophyte View MSA
123423939 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain