Gene : Lsat_1_v5_gn_4_30080 L. sativa V8
Defline:  (1 of 3) PTHR10694:SF33 - TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN Genomic Order:  898
Name:  ? Lsat_1_v5_gn_4_30080 Secondary Identifier:  ? PAC:38933899
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_30080 0.5kb upstream 0.5kb upstream 2702   true Lsat_1_v8_lg_4: 44726545-44729246 Lactuca sativa
Lsat_1_v5_gn_4_30080 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 44726545-44727044 Lactuca sativa
Lsat_1_v5_gn_4_30080 0.5kb downstream 0.5kb downstream 2702   true Lsat_1_v8_lg_4: 44727045-44729746 Lactuca sativa
Lsat_1_v5_gn_4_30080 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 44729247-44729746 Lactuca sativa
Lsat_1_v5_gn_4_30080 1.0kb upstream 1.0kb upstream 3202   true Lsat_1_v8_lg_4: 44726045-44729246 Lactuca sativa
Lsat_1_v5_gn_4_30080 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 44726045-44727044 Lactuca sativa
Lsat_1_v5_gn_4_30080 1.0kb downstream 1.0kb downstream 3202   true Lsat_1_v8_lg_4: 44727045-44730246 Lactuca sativa
Lsat_1_v5_gn_4_30080 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 44729247-44730246 Lactuca sativa
Lsat_1_v5_gn_4_30080 2.0kb upstream 2.0kb upstream 4202   true Lsat_1_v8_lg_4: 44725045-44729246 Lactuca sativa
Lsat_1_v5_gn_4_30080 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 44725045-44727044 Lactuca sativa
Lsat_1_v5_gn_4_30080 2.0kb downstream 2.0kb downstream 4202   true Lsat_1_v8_lg_4: 44727045-44731246 Lactuca sativa
Lsat_1_v5_gn_4_30080 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 44729247-44731246 Lactuca sativa
Lsat_1_v5_gn_4_30080 5.0kb upstream 5.0kb upstream 7202   true Lsat_1_v8_lg_4: 44722045-44729246 Lactuca sativa
Lsat_1_v5_gn_4_30080 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 44722045-44727044 Lactuca sativa
Lsat_1_v5_gn_4_30080 5.0kb downstream 5.0kb downstream 7202   true Lsat_1_v8_lg_4: 44727045-44734246 Lactuca sativa
Lsat_1_v5_gn_4_30080 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 44729247-44734246 Lactuca sativa
Lsat_1_v5_gn_4_30080 10.0kb upstream 10.0kb upstream 12202   true Lsat_1_v8_lg_4: 44717045-44729246 Lactuca sativa
Lsat_1_v5_gn_4_30080 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 44717045-44727044 Lactuca sativa
Lsat_1_v5_gn_4_30080 10.0kb downstream 10.0kb downstream 12202   true Lsat_1_v8_lg_4: 44727045-44739246 Lactuca sativa
Lsat_1_v5_gn_4_30080 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 44729247-44739246 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121453157 5263 Asterids View MSA
123746052 5271 Pentapetalae View MSA
122771756 5272 Eudicot View MSA
122050637 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121350129 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain