Gene : Lsat_1_v5_gn_4_38180 L. sativa V8
Defline:  (1 of 3) KOG0231 - Junctional membrane complex protein Junctophilin and related MORN repeat proteins Genomic Order:  1135
Name:  ? Lsat_1_v5_gn_4_38180 Secondary Identifier:  ? PAC:38933776
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6351 Lactuca sativa pathologic  
Lsativa PWY-6352 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_38180 0.5kb upstream 0.5kb upstream 2085   true Lsat_1_v8_lg_4: 56935006-56937090 Lactuca sativa
Lsat_1_v5_gn_4_38180 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 56935006-56935505 Lactuca sativa
Lsat_1_v5_gn_4_38180 0.5kb downstream 0.5kb downstream 2085   true Lsat_1_v8_lg_4: 56935506-56937590 Lactuca sativa
Lsat_1_v5_gn_4_38180 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 56937091-56937590 Lactuca sativa
Lsat_1_v5_gn_4_38180 1.0kb upstream 1.0kb upstream 2585   true Lsat_1_v8_lg_4: 56934506-56937090 Lactuca sativa
Lsat_1_v5_gn_4_38180 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 56934506-56935505 Lactuca sativa
Lsat_1_v5_gn_4_38180 1.0kb downstream 1.0kb downstream 2585   true Lsat_1_v8_lg_4: 56935506-56938090 Lactuca sativa
Lsat_1_v5_gn_4_38180 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 56937091-56938090 Lactuca sativa
Lsat_1_v5_gn_4_38180 2.0kb upstream 2.0kb upstream 3585   true Lsat_1_v8_lg_4: 56933506-56937090 Lactuca sativa
Lsat_1_v5_gn_4_38180 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 56933506-56935505 Lactuca sativa
Lsat_1_v5_gn_4_38180 2.0kb downstream 2.0kb downstream 3585   true Lsat_1_v8_lg_4: 56935506-56939090 Lactuca sativa
Lsat_1_v5_gn_4_38180 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 56937091-56939090 Lactuca sativa
Lsat_1_v5_gn_4_38180 5.0kb upstream 5.0kb upstream 6585   true Lsat_1_v8_lg_4: 56930506-56937090 Lactuca sativa
Lsat_1_v5_gn_4_38180 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 56930506-56935505 Lactuca sativa
Lsat_1_v5_gn_4_38180 5.0kb downstream 5.0kb downstream 6585   true Lsat_1_v8_lg_4: 56935506-56942090 Lactuca sativa
Lsat_1_v5_gn_4_38180 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 56937091-56942090 Lactuca sativa
Lsat_1_v5_gn_4_38180 10.0kb upstream 10.0kb upstream 11585   true Lsat_1_v8_lg_4: 56925506-56937090 Lactuca sativa
Lsat_1_v5_gn_4_38180 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 56925506-56935505 Lactuca sativa
Lsat_1_v5_gn_4_38180 10.0kb downstream 10.0kb downstream 11585   true Lsat_1_v8_lg_4: 56935506-56947090 Lactuca sativa
Lsat_1_v5_gn_4_38180 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 56937091-56947090 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479313 5263 Asterids View MSA
123741886 5271 Pentapetalae View MSA
122788830 5272 Eudicot View MSA
122047970 5273 Angiosperm View MSA
121346800 5274 Embryophyte View MSA
123428791 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain