Gene : Lsat_1_v5_gn_4_39241 L. sativa V8
Defline:  (1 of 13) PF01535//PF13812 - PPR repeat (PPR) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1174
Name:  ? Lsat_1_v5_gn_4_39241 Secondary Identifier:  ? PAC:38935309
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_4_39241 0.5kb upstream 0.5kb upstream 2622   true Lsat_1_v8_lg_4: 58655267-58657888 Lactuca sativa
Lsat_1_v5_gn_4_39241 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_4: 58657389-58657888 Lactuca sativa
Lsat_1_v5_gn_4_39241 0.5kb downstream 0.5kb downstream 2622   true Lsat_1_v8_lg_4: 58654767-58657388 Lactuca sativa
Lsat_1_v5_gn_4_39241 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_4: 58654767-58655266 Lactuca sativa
Lsat_1_v5_gn_4_39241 1.0kb upstream 1.0kb upstream 3122   true Lsat_1_v8_lg_4: 58655267-58658388 Lactuca sativa
Lsat_1_v5_gn_4_39241 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_4: 58657389-58658388 Lactuca sativa
Lsat_1_v5_gn_4_39241 1.0kb downstream 1.0kb downstream 3122   true Lsat_1_v8_lg_4: 58654267-58657388 Lactuca sativa
Lsat_1_v5_gn_4_39241 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_4: 58654267-58655266 Lactuca sativa
Lsat_1_v5_gn_4_39241 2.0kb upstream 2.0kb upstream 4122   true Lsat_1_v8_lg_4: 58655267-58659388 Lactuca sativa
Lsat_1_v5_gn_4_39241 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_4: 58657389-58659388 Lactuca sativa
Lsat_1_v5_gn_4_39241 2.0kb downstream 2.0kb downstream 4122   true Lsat_1_v8_lg_4: 58653267-58657388 Lactuca sativa
Lsat_1_v5_gn_4_39241 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_4: 58653267-58655266 Lactuca sativa
Lsat_1_v5_gn_4_39241 5.0kb upstream 5.0kb upstream 7122   true Lsat_1_v8_lg_4: 58655267-58662388 Lactuca sativa
Lsat_1_v5_gn_4_39241 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_4: 58657389-58662388 Lactuca sativa
Lsat_1_v5_gn_4_39241 5.0kb downstream 5.0kb downstream 7122   true Lsat_1_v8_lg_4: 58650267-58657388 Lactuca sativa
Lsat_1_v5_gn_4_39241 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_4: 58650267-58655266 Lactuca sativa
Lsat_1_v5_gn_4_39241 10.0kb upstream 10.0kb upstream 12122   true Lsat_1_v8_lg_4: 58655267-58667388 Lactuca sativa
Lsat_1_v5_gn_4_39241 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_4: 58657389-58667388 Lactuca sativa
Lsat_1_v5_gn_4_39241 10.0kb downstream 10.0kb downstream 12122   true Lsat_1_v8_lg_4: 58645267-58657388 Lactuca sativa
Lsat_1_v5_gn_4_39241 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_4: 58645267-58655266 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121476012 5263 Asterids View MSA
123739540 5271 Pentapetalae View MSA
122790225 5272 Eudicot View MSA
122049132 5273 Angiosperm View MSA
121351065 5274 Embryophyte View MSA
123381996 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain