Gene : Lsat_1_v5_gn_5_104340 L. sativa V8
Defline:  (1 of 200) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2714
Name:  ? Lsat_1_v5_gn_5_104340 Secondary Identifier:  ? PAC:38964238
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_104340 0.5kb upstream 0.5kb upstream 4837   true Lsat_1_v8_lg_5: 221624499-221629335 Lactuca sativa
Lsat_1_v5_gn_5_104340 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 221628836-221629335 Lactuca sativa
Lsat_1_v5_gn_5_104340 0.5kb downstream 0.5kb downstream 4837   true Lsat_1_v8_lg_5: 221623999-221628835 Lactuca sativa
Lsat_1_v5_gn_5_104340 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 221623999-221624498 Lactuca sativa
Lsat_1_v5_gn_5_104340 1.0kb upstream 1.0kb upstream 5337   true Lsat_1_v8_lg_5: 221624499-221629835 Lactuca sativa
Lsat_1_v5_gn_5_104340 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 221628836-221629835 Lactuca sativa
Lsat_1_v5_gn_5_104340 1.0kb downstream 1.0kb downstream 5337   true Lsat_1_v8_lg_5: 221623499-221628835 Lactuca sativa
Lsat_1_v5_gn_5_104340 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 221623499-221624498 Lactuca sativa
Lsat_1_v5_gn_5_104340 2.0kb upstream 2.0kb upstream 6337   true Lsat_1_v8_lg_5: 221624499-221630835 Lactuca sativa
Lsat_1_v5_gn_5_104340 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 221628836-221630835 Lactuca sativa
Lsat_1_v5_gn_5_104340 2.0kb downstream 2.0kb downstream 6337   true Lsat_1_v8_lg_5: 221622499-221628835 Lactuca sativa
Lsat_1_v5_gn_5_104340 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 221622499-221624498 Lactuca sativa
Lsat_1_v5_gn_5_104340 5.0kb upstream 5.0kb upstream 9337   true Lsat_1_v8_lg_5: 221624499-221633835 Lactuca sativa
Lsat_1_v5_gn_5_104340 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 221628836-221633835 Lactuca sativa
Lsat_1_v5_gn_5_104340 5.0kb downstream 5.0kb downstream 9337   true Lsat_1_v8_lg_5: 221619499-221628835 Lactuca sativa
Lsat_1_v5_gn_5_104340 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 221619499-221624498 Lactuca sativa
Lsat_1_v5_gn_5_104340 10.0kb upstream 10.0kb upstream 14337   true Lsat_1_v8_lg_5: 221624499-221638835 Lactuca sativa
Lsat_1_v5_gn_5_104340 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 221628836-221638835 Lactuca sativa
Lsat_1_v5_gn_5_104340 10.0kb downstream 10.0kb downstream 14337   true Lsat_1_v8_lg_5: 221614499-221628835 Lactuca sativa
Lsat_1_v5_gn_5_104340 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 221614499-221624498 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474720 5263 Asterids View MSA
123740694 5271 Pentapetalae View MSA
122786557 5272 Eudicot View MSA
122042535 5273 Angiosperm View MSA
121309984 5274 Embryophyte View MSA
123347596 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain