Gene : Lsat_1_v5_gn_5_139581 L. sativa V8
Defline:  (1 of 34) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  3749
Name:  ? Lsat_1_v5_gn_5_139581 Secondary Identifier:  ? PAC:38971210
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_139581 0.5kb upstream 0.5kb upstream 3946   true Lsat_1_v8_lg_5: 268494953-268498898 Lactuca sativa
Lsat_1_v5_gn_5_139581 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 268498399-268498898 Lactuca sativa
Lsat_1_v5_gn_5_139581 0.5kb downstream 0.5kb downstream 3946   true Lsat_1_v8_lg_5: 268494453-268498398 Lactuca sativa
Lsat_1_v5_gn_5_139581 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 268494453-268494952 Lactuca sativa
Lsat_1_v5_gn_5_139581 1.0kb upstream 1.0kb upstream 4446   true Lsat_1_v8_lg_5: 268494953-268499398 Lactuca sativa
Lsat_1_v5_gn_5_139581 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 268498399-268499398 Lactuca sativa
Lsat_1_v5_gn_5_139581 1.0kb downstream 1.0kb downstream 4446   true Lsat_1_v8_lg_5: 268493953-268498398 Lactuca sativa
Lsat_1_v5_gn_5_139581 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 268493953-268494952 Lactuca sativa
Lsat_1_v5_gn_5_139581 2.0kb upstream 2.0kb upstream 5446   true Lsat_1_v8_lg_5: 268494953-268500398 Lactuca sativa
Lsat_1_v5_gn_5_139581 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 268498399-268500398 Lactuca sativa
Lsat_1_v5_gn_5_139581 2.0kb downstream 2.0kb downstream 5446   true Lsat_1_v8_lg_5: 268492953-268498398 Lactuca sativa
Lsat_1_v5_gn_5_139581 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 268492953-268494952 Lactuca sativa
Lsat_1_v5_gn_5_139581 5.0kb upstream 5.0kb upstream 8446   true Lsat_1_v8_lg_5: 268494953-268503398 Lactuca sativa
Lsat_1_v5_gn_5_139581 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 268498399-268503398 Lactuca sativa
Lsat_1_v5_gn_5_139581 5.0kb downstream 5.0kb downstream 8446   true Lsat_1_v8_lg_5: 268489953-268498398 Lactuca sativa
Lsat_1_v5_gn_5_139581 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 268489953-268494952 Lactuca sativa
Lsat_1_v5_gn_5_139581 10.0kb upstream 10.0kb upstream 13446   true Lsat_1_v8_lg_5: 268494953-268508398 Lactuca sativa
Lsat_1_v5_gn_5_139581 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 268498399-268508398 Lactuca sativa
Lsat_1_v5_gn_5_139581 10.0kb downstream 10.0kb downstream 13446   true Lsat_1_v8_lg_5: 268484953-268498398 Lactuca sativa
Lsat_1_v5_gn_5_139581 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 268484953-268494952 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026431 5273 Angiosperm View MSA
121480196 5263 Asterids View MSA
123751274 5271 Pentapetalae View MSA
122794411 5272 Eudicot View MSA
121348629 5274 Embryophyte View MSA
123380947 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain