Gene : Lsat_1_v5_gn_5_14440 L. sativa V8
Defline:  (1 of 2) K00099 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase (dxr) Genomic Order:  439
Name:  ? Lsat_1_v5_gn_5_14440 Secondary Identifier:  ? PAC:38967636
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7560 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_14440 0.5kb upstream 0.5kb upstream 3274   true Lsat_1_v8_lg_5: 34915120-34918393 Lactuca sativa
Lsat_1_v5_gn_5_14440 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 34917894-34918393 Lactuca sativa
Lsat_1_v5_gn_5_14440 0.5kb downstream 0.5kb downstream 3274   true Lsat_1_v8_lg_5: 34914620-34917893 Lactuca sativa
Lsat_1_v5_gn_5_14440 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 34914620-34915119 Lactuca sativa
Lsat_1_v5_gn_5_14440 1.0kb upstream 1.0kb upstream 3774   true Lsat_1_v8_lg_5: 34915120-34918893 Lactuca sativa
Lsat_1_v5_gn_5_14440 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 34917894-34918893 Lactuca sativa
Lsat_1_v5_gn_5_14440 1.0kb downstream 1.0kb downstream 3774   true Lsat_1_v8_lg_5: 34914120-34917893 Lactuca sativa
Lsat_1_v5_gn_5_14440 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 34914120-34915119 Lactuca sativa
Lsat_1_v5_gn_5_14440 2.0kb upstream 2.0kb upstream 4774   true Lsat_1_v8_lg_5: 34915120-34919893 Lactuca sativa
Lsat_1_v5_gn_5_14440 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 34917894-34919893 Lactuca sativa
Lsat_1_v5_gn_5_14440 2.0kb downstream 2.0kb downstream 4774   true Lsat_1_v8_lg_5: 34913120-34917893 Lactuca sativa
Lsat_1_v5_gn_5_14440 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 34913120-34915119 Lactuca sativa
Lsat_1_v5_gn_5_14440 5.0kb upstream 5.0kb upstream 7774   true Lsat_1_v8_lg_5: 34915120-34922893 Lactuca sativa
Lsat_1_v5_gn_5_14440 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 34917894-34922893 Lactuca sativa
Lsat_1_v5_gn_5_14440 5.0kb downstream 5.0kb downstream 7774   true Lsat_1_v8_lg_5: 34910120-34917893 Lactuca sativa
Lsat_1_v5_gn_5_14440 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 34910120-34915119 Lactuca sativa
Lsat_1_v5_gn_5_14440 10.0kb upstream 10.0kb upstream 12774   true Lsat_1_v8_lg_5: 34915120-34927893 Lactuca sativa
Lsat_1_v5_gn_5_14440 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 34917894-34927893 Lactuca sativa
Lsat_1_v5_gn_5_14440 10.0kb downstream 10.0kb downstream 12774   true Lsat_1_v8_lg_5: 34905120-34917893 Lactuca sativa
Lsat_1_v5_gn_5_14440 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 34905120-34915119 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041406 5273 Angiosperm View MSA
121467181 5263 Asterids View MSA
123736883 5271 Pentapetalae View MSA
122791920 5272 Eudicot View MSA
121344534 5274 Embryophyte View MSA
123424385 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain