Gene : Lsat_1_v5_gn_5_120740 L. sativa V8
Defline:  (1 of 2) PTHR10543:SF42 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED2, CHLOROPLASTIC-RELATED Genomic Order:  3196
Name:  ? Lsat_1_v5_gn_5_120740 Secondary Identifier:  ? PAC:38964690
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-695 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_120740 0.5kb upstream 0.5kb upstream 2720   true Lsat_1_v8_lg_5: 244108328-244111047 Lactuca sativa
Lsat_1_v5_gn_5_120740 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 244108328-244108827 Lactuca sativa
Lsat_1_v5_gn_5_120740 0.5kb downstream 0.5kb downstream 2720   true Lsat_1_v8_lg_5: 244108828-244111547 Lactuca sativa
Lsat_1_v5_gn_5_120740 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 244111048-244111547 Lactuca sativa
Lsat_1_v5_gn_5_120740 1.0kb upstream 1.0kb upstream 3220   true Lsat_1_v8_lg_5: 244107828-244111047 Lactuca sativa
Lsat_1_v5_gn_5_120740 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 244107828-244108827 Lactuca sativa
Lsat_1_v5_gn_5_120740 1.0kb downstream 1.0kb downstream 3220   true Lsat_1_v8_lg_5: 244108828-244112047 Lactuca sativa
Lsat_1_v5_gn_5_120740 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 244111048-244112047 Lactuca sativa
Lsat_1_v5_gn_5_120740 2.0kb upstream 2.0kb upstream 4220   true Lsat_1_v8_lg_5: 244106828-244111047 Lactuca sativa
Lsat_1_v5_gn_5_120740 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 244106828-244108827 Lactuca sativa
Lsat_1_v5_gn_5_120740 2.0kb downstream 2.0kb downstream 4220   true Lsat_1_v8_lg_5: 244108828-244113047 Lactuca sativa
Lsat_1_v5_gn_5_120740 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 244111048-244113047 Lactuca sativa
Lsat_1_v5_gn_5_120740 5.0kb upstream 5.0kb upstream 7220   true Lsat_1_v8_lg_5: 244103828-244111047 Lactuca sativa
Lsat_1_v5_gn_5_120740 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 244103828-244108827 Lactuca sativa
Lsat_1_v5_gn_5_120740 5.0kb downstream 5.0kb downstream 7220   true Lsat_1_v8_lg_5: 244108828-244116047 Lactuca sativa
Lsat_1_v5_gn_5_120740 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 244111048-244116047 Lactuca sativa
Lsat_1_v5_gn_5_120740 10.0kb upstream 10.0kb upstream 12220   true Lsat_1_v8_lg_5: 244098828-244111047 Lactuca sativa
Lsat_1_v5_gn_5_120740 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 244098828-244108827 Lactuca sativa
Lsat_1_v5_gn_5_120740 10.0kb downstream 10.0kb downstream 12220   true Lsat_1_v8_lg_5: 244108828-244121047 Lactuca sativa
Lsat_1_v5_gn_5_120740 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 244111048-244121047 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121480927 5263 Asterids View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain