Gene : Lsat_1_v5_gn_5_121860 L. sativa V8
Defline:  (1 of 1) K00601 - phosphoribosylglycinamide formyltransferase (E2.1.2.2) Genomic Order:  3238
Name:  ? Lsat_1_v5_gn_5_121860 Secondary Identifier:  ? PAC:38971865
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-6121 Lactuca sativa pathologic  
Lsativa PWY-6613 Lactuca sativa pathologic  
Lsativa PWY-841 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_121860 0.5kb upstream 0.5kb upstream 2157   true Lsat_1_v8_lg_5: 246325095-246327251 Lactuca sativa
Lsat_1_v5_gn_5_121860 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 246326752-246327251 Lactuca sativa
Lsat_1_v5_gn_5_121860 0.5kb downstream 0.5kb downstream 2157   true Lsat_1_v8_lg_5: 246324595-246326751 Lactuca sativa
Lsat_1_v5_gn_5_121860 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 246324595-246325094 Lactuca sativa
Lsat_1_v5_gn_5_121860 1.0kb upstream 1.0kb upstream 2657   true Lsat_1_v8_lg_5: 246325095-246327751 Lactuca sativa
Lsat_1_v5_gn_5_121860 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 246326752-246327751 Lactuca sativa
Lsat_1_v5_gn_5_121860 1.0kb downstream 1.0kb downstream 2657   true Lsat_1_v8_lg_5: 246324095-246326751 Lactuca sativa
Lsat_1_v5_gn_5_121860 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 246324095-246325094 Lactuca sativa
Lsat_1_v5_gn_5_121860 2.0kb upstream 2.0kb upstream 3657   true Lsat_1_v8_lg_5: 246325095-246328751 Lactuca sativa
Lsat_1_v5_gn_5_121860 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 246326752-246328751 Lactuca sativa
Lsat_1_v5_gn_5_121860 2.0kb downstream 2.0kb downstream 3657   true Lsat_1_v8_lg_5: 246323095-246326751 Lactuca sativa
Lsat_1_v5_gn_5_121860 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 246323095-246325094 Lactuca sativa
Lsat_1_v5_gn_5_121860 5.0kb upstream 5.0kb upstream 6657   true Lsat_1_v8_lg_5: 246325095-246331751 Lactuca sativa
Lsat_1_v5_gn_5_121860 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 246326752-246331751 Lactuca sativa
Lsat_1_v5_gn_5_121860 5.0kb downstream 5.0kb downstream 6657   true Lsat_1_v8_lg_5: 246320095-246326751 Lactuca sativa
Lsat_1_v5_gn_5_121860 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 246320095-246325094 Lactuca sativa
Lsat_1_v5_gn_5_121860 10.0kb upstream 10.0kb upstream 11657   true Lsat_1_v8_lg_5: 246325095-246336751 Lactuca sativa
Lsat_1_v5_gn_5_121860 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 246326752-246336751 Lactuca sativa
Lsat_1_v5_gn_5_121860 10.0kb downstream 10.0kb downstream 11657   true Lsat_1_v8_lg_5: 246315095-246326751 Lactuca sativa
Lsat_1_v5_gn_5_121860 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 246315095-246325094 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472971 5263 Asterids View MSA
123739815 5271 Pentapetalae View MSA
122788812 5272 Eudicot View MSA
122049914 5273 Angiosperm View MSA
121349551 5274 Embryophyte View MSA
123426469 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain