Gene : Lsat_1_v5_gn_5_123621 L. sativa V8
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  3296
Name:  ? Lsat_1_v5_gn_5_123621 Secondary Identifier:  ? PAC:38968637
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa CAROTENOID-PWY Lactuca sativa pathologic  
Lsativa PWY-5943 Lactuca sativa pathologic  
Lsativa PWY-5947 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_123621 0.5kb upstream 0.5kb upstream 5715   true Lsat_1_v8_lg_5: 248634889-248640603 Lactuca sativa
Lsat_1_v5_gn_5_123621 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 248640104-248640603 Lactuca sativa
Lsat_1_v5_gn_5_123621 0.5kb downstream 0.5kb downstream 5715   true Lsat_1_v8_lg_5: 248634389-248640103 Lactuca sativa
Lsat_1_v5_gn_5_123621 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 248634389-248634888 Lactuca sativa
Lsat_1_v5_gn_5_123621 1.0kb upstream 1.0kb upstream 6215   true Lsat_1_v8_lg_5: 248634889-248641103 Lactuca sativa
Lsat_1_v5_gn_5_123621 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 248640104-248641103 Lactuca sativa
Lsat_1_v5_gn_5_123621 1.0kb downstream 1.0kb downstream 6215   true Lsat_1_v8_lg_5: 248633889-248640103 Lactuca sativa
Lsat_1_v5_gn_5_123621 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 248633889-248634888 Lactuca sativa
Lsat_1_v5_gn_5_123621 2.0kb upstream 2.0kb upstream 7215   true Lsat_1_v8_lg_5: 248634889-248642103 Lactuca sativa
Lsat_1_v5_gn_5_123621 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 248640104-248642103 Lactuca sativa
Lsat_1_v5_gn_5_123621 2.0kb downstream 2.0kb downstream 7215   true Lsat_1_v8_lg_5: 248632889-248640103 Lactuca sativa
Lsat_1_v5_gn_5_123621 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 248632889-248634888 Lactuca sativa
Lsat_1_v5_gn_5_123621 5.0kb upstream 5.0kb upstream 10215   true Lsat_1_v8_lg_5: 248634889-248645103 Lactuca sativa
Lsat_1_v5_gn_5_123621 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 248640104-248645103 Lactuca sativa
Lsat_1_v5_gn_5_123621 5.0kb downstream 5.0kb downstream 10215   true Lsat_1_v8_lg_5: 248629889-248640103 Lactuca sativa
Lsat_1_v5_gn_5_123621 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 248629889-248634888 Lactuca sativa
Lsat_1_v5_gn_5_123621 10.0kb upstream 10.0kb upstream 15215   true Lsat_1_v8_lg_5: 248634889-248650103 Lactuca sativa
Lsat_1_v5_gn_5_123621 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 248640104-248650103 Lactuca sativa
Lsat_1_v5_gn_5_123621 10.0kb downstream 10.0kb downstream 15215   true Lsat_1_v8_lg_5: 248624889-248640103 Lactuca sativa
Lsat_1_v5_gn_5_123621 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 248624889-248634888 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472024 5263 Asterids View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain