Gene : Lsat_1_v5_gn_5_12680 L. sativa V8
Defline:  (1 of 2) PTHR13421//PTHR13421:SF16 - FAMILY NOT NAMED // SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 3 Genomic Order:  377
Name:  ? Lsat_1_v5_gn_5_12680 Secondary Identifier:  ? PAC:38969032
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_12680 0.5kb upstream 0.5kb upstream 2415   true Lsat_1_v8_lg_5: 27333570-27335984 Lactuca sativa
Lsat_1_v5_gn_5_12680 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 27335485-27335984 Lactuca sativa
Lsat_1_v5_gn_5_12680 0.5kb downstream 0.5kb downstream 2415   true Lsat_1_v8_lg_5: 27333070-27335484 Lactuca sativa
Lsat_1_v5_gn_5_12680 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 27333070-27333569 Lactuca sativa
Lsat_1_v5_gn_5_12680 1.0kb upstream 1.0kb upstream 2915   true Lsat_1_v8_lg_5: 27333570-27336484 Lactuca sativa
Lsat_1_v5_gn_5_12680 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 27335485-27336484 Lactuca sativa
Lsat_1_v5_gn_5_12680 1.0kb downstream 1.0kb downstream 2915   true Lsat_1_v8_lg_5: 27332570-27335484 Lactuca sativa
Lsat_1_v5_gn_5_12680 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 27332570-27333569 Lactuca sativa
Lsat_1_v5_gn_5_12680 2.0kb upstream 2.0kb upstream 3915   true Lsat_1_v8_lg_5: 27333570-27337484 Lactuca sativa
Lsat_1_v5_gn_5_12680 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 27335485-27337484 Lactuca sativa
Lsat_1_v5_gn_5_12680 2.0kb downstream 2.0kb downstream 3915   true Lsat_1_v8_lg_5: 27331570-27335484 Lactuca sativa
Lsat_1_v5_gn_5_12680 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 27331570-27333569 Lactuca sativa
Lsat_1_v5_gn_5_12680 5.0kb upstream 5.0kb upstream 6915   true Lsat_1_v8_lg_5: 27333570-27340484 Lactuca sativa
Lsat_1_v5_gn_5_12680 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 27335485-27340484 Lactuca sativa
Lsat_1_v5_gn_5_12680 5.0kb downstream 5.0kb downstream 6915   true Lsat_1_v8_lg_5: 27328570-27335484 Lactuca sativa
Lsat_1_v5_gn_5_12680 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 27328570-27333569 Lactuca sativa
Lsat_1_v5_gn_5_12680 10.0kb upstream 10.0kb upstream 11915   true Lsat_1_v8_lg_5: 27333570-27345484 Lactuca sativa
Lsat_1_v5_gn_5_12680 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 27335485-27345484 Lactuca sativa
Lsat_1_v5_gn_5_12680 10.0kb downstream 10.0kb downstream 11915   true Lsat_1_v8_lg_5: 27323570-27335484 Lactuca sativa
Lsat_1_v5_gn_5_12680 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 27323570-27333569 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121445721 5263 Asterids Singleton cluster - no MSA
123750500 5271 Pentapetalae View MSA
122795479 5272 Eudicot View MSA
122043985 5273 Angiosperm View MSA
121347836 5274 Embryophyte View MSA
123424819 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain