Gene : Lsat_1_v5_gn_5_174240 L. sativa V8
Defline:  (1 of 3) PTHR31165//PTHR31165:SF6 - FAMILY NOT NAMED // PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 Genomic Order:  4763
Name:  ? Lsat_1_v5_gn_5_174240 Secondary Identifier:  ? PAC:38971190
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_174240 0.5kb upstream 0.5kb upstream 1289   true Lsat_1_v8_lg_5: 316700284-316701572 Lactuca sativa
Lsat_1_v5_gn_5_174240 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 316700284-316700783 Lactuca sativa
Lsat_1_v5_gn_5_174240 0.5kb downstream 0.5kb downstream 1289   true Lsat_1_v8_lg_5: 316700784-316702072 Lactuca sativa
Lsat_1_v5_gn_5_174240 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 316701573-316702072 Lactuca sativa
Lsat_1_v5_gn_5_174240 1.0kb upstream 1.0kb upstream 1789   true Lsat_1_v8_lg_5: 316699784-316701572 Lactuca sativa
Lsat_1_v5_gn_5_174240 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 316699784-316700783 Lactuca sativa
Lsat_1_v5_gn_5_174240 1.0kb downstream 1.0kb downstream 1789   true Lsat_1_v8_lg_5: 316700784-316702572 Lactuca sativa
Lsat_1_v5_gn_5_174240 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 316701573-316702572 Lactuca sativa
Lsat_1_v5_gn_5_174240 2.0kb upstream 2.0kb upstream 2789   true Lsat_1_v8_lg_5: 316698784-316701572 Lactuca sativa
Lsat_1_v5_gn_5_174240 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 316698784-316700783 Lactuca sativa
Lsat_1_v5_gn_5_174240 2.0kb downstream 2.0kb downstream 2789   true Lsat_1_v8_lg_5: 316700784-316703572 Lactuca sativa
Lsat_1_v5_gn_5_174240 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 316701573-316703572 Lactuca sativa
Lsat_1_v5_gn_5_174240 5.0kb upstream 5.0kb upstream 5789   true Lsat_1_v8_lg_5: 316695784-316701572 Lactuca sativa
Lsat_1_v5_gn_5_174240 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 316695784-316700783 Lactuca sativa
Lsat_1_v5_gn_5_174240 5.0kb downstream 5.0kb downstream 5789   true Lsat_1_v8_lg_5: 316700784-316706572 Lactuca sativa
Lsat_1_v5_gn_5_174240 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 316701573-316706572 Lactuca sativa
Lsat_1_v5_gn_5_174240 10.0kb upstream 10.0kb upstream 10789   true Lsat_1_v8_lg_5: 316690784-316701572 Lactuca sativa
Lsat_1_v5_gn_5_174240 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 316690784-316700783 Lactuca sativa
Lsat_1_v5_gn_5_174240 10.0kb downstream 10.0kb downstream 10789   true Lsat_1_v8_lg_5: 316700784-316711572 Lactuca sativa
Lsat_1_v5_gn_5_174240 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 316701573-316711572 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473663 5263 Asterids View MSA
123741885 5271 Pentapetalae View MSA
122789357 5272 Eudicot View MSA
122049887 5273 Angiosperm View MSA
121351474 5274 Embryophyte View MSA
123382179 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain