Gene : Lsat_1_v5_gn_5_178661 L. sativa V8
Defline:  (1 of 3) PTHR23315//PTHR23315:SF75 - BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING // U-BOX DOMAIN-CONTAINING PROTEIN 9 Genomic Order:  4904
Name:  ? Lsat_1_v5_gn_5_178661 Secondary Identifier:  ? PAC:38969401
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7511 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_178661 0.5kb upstream 0.5kb upstream 2954   true Lsat_1_v8_lg_5: 322022871-322025824 Lactuca sativa
Lsat_1_v5_gn_5_178661 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 322025325-322025824 Lactuca sativa
Lsat_1_v5_gn_5_178661 0.5kb downstream 0.5kb downstream 2954   true Lsat_1_v8_lg_5: 322022371-322025324 Lactuca sativa
Lsat_1_v5_gn_5_178661 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 322022371-322022870 Lactuca sativa
Lsat_1_v5_gn_5_178661 1.0kb upstream 1.0kb upstream 3454   true Lsat_1_v8_lg_5: 322022871-322026324 Lactuca sativa
Lsat_1_v5_gn_5_178661 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 322025325-322026324 Lactuca sativa
Lsat_1_v5_gn_5_178661 1.0kb downstream 1.0kb downstream 3454   true Lsat_1_v8_lg_5: 322021871-322025324 Lactuca sativa
Lsat_1_v5_gn_5_178661 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 322021871-322022870 Lactuca sativa
Lsat_1_v5_gn_5_178661 2.0kb upstream 2.0kb upstream 4454   true Lsat_1_v8_lg_5: 322022871-322027324 Lactuca sativa
Lsat_1_v5_gn_5_178661 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 322025325-322027324 Lactuca sativa
Lsat_1_v5_gn_5_178661 2.0kb downstream 2.0kb downstream 4454   true Lsat_1_v8_lg_5: 322020871-322025324 Lactuca sativa
Lsat_1_v5_gn_5_178661 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 322020871-322022870 Lactuca sativa
Lsat_1_v5_gn_5_178661 5.0kb upstream 5.0kb upstream 7454   true Lsat_1_v8_lg_5: 322022871-322030324 Lactuca sativa
Lsat_1_v5_gn_5_178661 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 322025325-322030324 Lactuca sativa
Lsat_1_v5_gn_5_178661 5.0kb downstream 5.0kb downstream 7454   true Lsat_1_v8_lg_5: 322017871-322025324 Lactuca sativa
Lsat_1_v5_gn_5_178661 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 322017871-322022870 Lactuca sativa
Lsat_1_v5_gn_5_178661 10.0kb upstream 10.0kb upstream 12454   true Lsat_1_v8_lg_5: 322022871-322035324 Lactuca sativa
Lsat_1_v5_gn_5_178661 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 322025325-322035324 Lactuca sativa
Lsat_1_v5_gn_5_178661 10.0kb downstream 10.0kb downstream 12454   true Lsat_1_v8_lg_5: 322012871-322025324 Lactuca sativa
Lsat_1_v5_gn_5_178661 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 322012871-322022870 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029179 5273 Angiosperm View MSA
121482646 5263 Asterids View MSA
123745896 5271 Pentapetalae View MSA
122785914 5272 Eudicot View MSA
121350406 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain