Gene : Lsat_1_v5_gn_5_156361 L. sativa V8
Defline:  (1 of 1) PTHR10277//PTHR10277:SF38 - HOMOCITRATE SYNTHASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  4183
Name:  ? Lsat_1_v5_gn_5_156361 Secondary Identifier:  ? PAC:38971148
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa LEU-DEG2-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_156361 0.5kb upstream 0.5kb upstream 3726   true Lsat_1_v8_lg_5: 290255388-290259113 Lactuca sativa
Lsat_1_v5_gn_5_156361 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 290258614-290259113 Lactuca sativa
Lsat_1_v5_gn_5_156361 0.5kb downstream 0.5kb downstream 3726   true Lsat_1_v8_lg_5: 290254888-290258613 Lactuca sativa
Lsat_1_v5_gn_5_156361 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 290254888-290255387 Lactuca sativa
Lsat_1_v5_gn_5_156361 1.0kb upstream 1.0kb upstream 4226   true Lsat_1_v8_lg_5: 290255388-290259613 Lactuca sativa
Lsat_1_v5_gn_5_156361 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 290258614-290259613 Lactuca sativa
Lsat_1_v5_gn_5_156361 1.0kb downstream 1.0kb downstream 4226   true Lsat_1_v8_lg_5: 290254388-290258613 Lactuca sativa
Lsat_1_v5_gn_5_156361 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 290254388-290255387 Lactuca sativa
Lsat_1_v5_gn_5_156361 2.0kb upstream 2.0kb upstream 5226   true Lsat_1_v8_lg_5: 290255388-290260613 Lactuca sativa
Lsat_1_v5_gn_5_156361 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 290258614-290260613 Lactuca sativa
Lsat_1_v5_gn_5_156361 2.0kb downstream 2.0kb downstream 5226   true Lsat_1_v8_lg_5: 290253388-290258613 Lactuca sativa
Lsat_1_v5_gn_5_156361 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 290253388-290255387 Lactuca sativa
Lsat_1_v5_gn_5_156361 5.0kb upstream 5.0kb upstream 8226   true Lsat_1_v8_lg_5: 290255388-290263613 Lactuca sativa
Lsat_1_v5_gn_5_156361 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 290258614-290263613 Lactuca sativa
Lsat_1_v5_gn_5_156361 5.0kb downstream 5.0kb downstream 8226   true Lsat_1_v8_lg_5: 290250388-290258613 Lactuca sativa
Lsat_1_v5_gn_5_156361 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 290250388-290255387 Lactuca sativa
Lsat_1_v5_gn_5_156361 10.0kb upstream 10.0kb upstream 13226   true Lsat_1_v8_lg_5: 290255388-290268613 Lactuca sativa
Lsat_1_v5_gn_5_156361 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 290258614-290268613 Lactuca sativa
Lsat_1_v5_gn_5_156361 10.0kb downstream 10.0kb downstream 13226   true Lsat_1_v8_lg_5: 290245388-290258613 Lactuca sativa
Lsat_1_v5_gn_5_156361 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 290245388-290255387 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467474 5263 Asterids View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain