Gene : Lsat_1_v5_gn_5_163941 L. sativa V8
Defline:  (1 of 2) PTHR12565//PTHR12565:SF112 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // TRANSCRIPTION FACTOR BHLH48-RELATED Genomic Order:  4461
Name:  ? Lsat_1_v5_gn_5_163941 Secondary Identifier:  ? PAC:38969796
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_163941 0.5kb upstream 0.5kb upstream 3444   true Lsat_1_v8_lg_5: 302788167-302791610 Lactuca sativa
Lsat_1_v5_gn_5_163941 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 302788167-302788666 Lactuca sativa
Lsat_1_v5_gn_5_163941 0.5kb downstream 0.5kb downstream 3444   true Lsat_1_v8_lg_5: 302788667-302792110 Lactuca sativa
Lsat_1_v5_gn_5_163941 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 302791611-302792110 Lactuca sativa
Lsat_1_v5_gn_5_163941 1.0kb upstream 1.0kb upstream 3944   true Lsat_1_v8_lg_5: 302787667-302791610 Lactuca sativa
Lsat_1_v5_gn_5_163941 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 302787667-302788666 Lactuca sativa
Lsat_1_v5_gn_5_163941 1.0kb downstream 1.0kb downstream 3944   true Lsat_1_v8_lg_5: 302788667-302792610 Lactuca sativa
Lsat_1_v5_gn_5_163941 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 302791611-302792610 Lactuca sativa
Lsat_1_v5_gn_5_163941 2.0kb upstream 2.0kb upstream 4944   true Lsat_1_v8_lg_5: 302786667-302791610 Lactuca sativa
Lsat_1_v5_gn_5_163941 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 302786667-302788666 Lactuca sativa
Lsat_1_v5_gn_5_163941 2.0kb downstream 2.0kb downstream 4944   true Lsat_1_v8_lg_5: 302788667-302793610 Lactuca sativa
Lsat_1_v5_gn_5_163941 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 302791611-302793610 Lactuca sativa
Lsat_1_v5_gn_5_163941 5.0kb upstream 5.0kb upstream 7944   true Lsat_1_v8_lg_5: 302783667-302791610 Lactuca sativa
Lsat_1_v5_gn_5_163941 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 302783667-302788666 Lactuca sativa
Lsat_1_v5_gn_5_163941 5.0kb downstream 5.0kb downstream 7944   true Lsat_1_v8_lg_5: 302788667-302796610 Lactuca sativa
Lsat_1_v5_gn_5_163941 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 302791611-302796610 Lactuca sativa
Lsat_1_v5_gn_5_163941 10.0kb upstream 10.0kb upstream 12944   true Lsat_1_v8_lg_5: 302778667-302791610 Lactuca sativa
Lsat_1_v5_gn_5_163941 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 302778667-302788666 Lactuca sativa
Lsat_1_v5_gn_5_163941 10.0kb downstream 10.0kb downstream 12944   true Lsat_1_v8_lg_5: 302788667-302801610 Lactuca sativa
Lsat_1_v5_gn_5_163941 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 302791611-302801610 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467655 5263 Asterids View MSA
123737117 5271 Pentapetalae View MSA
122769887 5272 Eudicot View MSA
122044005 5273 Angiosperm View MSA
121310224 5274 Embryophyte View MSA
123347772 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain