Gene : Lsat_1_v5_gn_5_163881 L. sativa V8
Defline:  (1 of 1) PTHR31339:SF10 - PECTIN LYASE-LIKE SUPERFAMILY PROTEIN Genomic Order:  4463
Name:  ? Lsat_1_v5_gn_5_163881 Secondary Identifier:  ? PAC:38969757
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-3781 Lactuca sativa pathologic  
Lsativa PWY-4302 Lactuca sativa pathologic  
Lsativa PWY-5083 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_163881 0.5kb upstream 0.5kb upstream 3243   true Lsat_1_v8_lg_5: 302824652-302827894 Lactuca sativa
Lsat_1_v5_gn_5_163881 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 302824652-302825151 Lactuca sativa
Lsat_1_v5_gn_5_163881 0.5kb downstream 0.5kb downstream 3243   true Lsat_1_v8_lg_5: 302825152-302828394 Lactuca sativa
Lsat_1_v5_gn_5_163881 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 302827895-302828394 Lactuca sativa
Lsat_1_v5_gn_5_163881 1.0kb upstream 1.0kb upstream 3743   true Lsat_1_v8_lg_5: 302824152-302827894 Lactuca sativa
Lsat_1_v5_gn_5_163881 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 302824152-302825151 Lactuca sativa
Lsat_1_v5_gn_5_163881 1.0kb downstream 1.0kb downstream 3743   true Lsat_1_v8_lg_5: 302825152-302828894 Lactuca sativa
Lsat_1_v5_gn_5_163881 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 302827895-302828894 Lactuca sativa
Lsat_1_v5_gn_5_163881 2.0kb upstream 2.0kb upstream 4743   true Lsat_1_v8_lg_5: 302823152-302827894 Lactuca sativa
Lsat_1_v5_gn_5_163881 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 302823152-302825151 Lactuca sativa
Lsat_1_v5_gn_5_163881 2.0kb downstream 2.0kb downstream 4743   true Lsat_1_v8_lg_5: 302825152-302829894 Lactuca sativa
Lsat_1_v5_gn_5_163881 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 302827895-302829894 Lactuca sativa
Lsat_1_v5_gn_5_163881 5.0kb upstream 5.0kb upstream 7743   true Lsat_1_v8_lg_5: 302820152-302827894 Lactuca sativa
Lsat_1_v5_gn_5_163881 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 302820152-302825151 Lactuca sativa
Lsat_1_v5_gn_5_163881 5.0kb downstream 5.0kb downstream 7743   true Lsat_1_v8_lg_5: 302825152-302832894 Lactuca sativa
Lsat_1_v5_gn_5_163881 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 302827895-302832894 Lactuca sativa
Lsat_1_v5_gn_5_163881 10.0kb upstream 10.0kb upstream 12743   true Lsat_1_v8_lg_5: 302815152-302827894 Lactuca sativa
Lsat_1_v5_gn_5_163881 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 302815152-302825151 Lactuca sativa
Lsat_1_v5_gn_5_163881 10.0kb downstream 10.0kb downstream 12743   true Lsat_1_v8_lg_5: 302825152-302837894 Lactuca sativa
Lsat_1_v5_gn_5_163881 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 302827895-302837894 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121471105 5263 Asterids View MSA
123738878 5271 Pentapetalae View MSA
122786031 5272 Eudicot View MSA
122041553 5273 Angiosperm View MSA
121343864 5274 Embryophyte View MSA
123425677 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain