Gene : Lsat_1_v5_gn_5_167061 L. sativa V8
Defline:  (1 of 4) PTHR24093//PTHR24093:SF289 - FAMILY NOT NAMED // CALCIUM-TRANSPORTING ATPASE 1, ENDOPLASMIC RETICULUM-TYPE-RELATED Genomic Order:  4572
Name:  ? Lsat_1_v5_gn_5_167061 Secondary Identifier:  ? PAC:38967587
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_167061 0.5kb upstream 0.5kb upstream 5193   true Lsat_1_v8_lg_5: 307693877-307699069 Lactuca sativa
Lsat_1_v5_gn_5_167061 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 307698570-307699069 Lactuca sativa
Lsat_1_v5_gn_5_167061 0.5kb downstream 0.5kb downstream 5193   true Lsat_1_v8_lg_5: 307693377-307698569 Lactuca sativa
Lsat_1_v5_gn_5_167061 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 307693377-307693876 Lactuca sativa
Lsat_1_v5_gn_5_167061 1.0kb upstream 1.0kb upstream 5693   true Lsat_1_v8_lg_5: 307693877-307699569 Lactuca sativa
Lsat_1_v5_gn_5_167061 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 307698570-307699569 Lactuca sativa
Lsat_1_v5_gn_5_167061 1.0kb downstream 1.0kb downstream 5693   true Lsat_1_v8_lg_5: 307692877-307698569 Lactuca sativa
Lsat_1_v5_gn_5_167061 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 307692877-307693876 Lactuca sativa
Lsat_1_v5_gn_5_167061 2.0kb upstream 2.0kb upstream 6693   true Lsat_1_v8_lg_5: 307693877-307700569 Lactuca sativa
Lsat_1_v5_gn_5_167061 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 307698570-307700569 Lactuca sativa
Lsat_1_v5_gn_5_167061 2.0kb downstream 2.0kb downstream 6693   true Lsat_1_v8_lg_5: 307691877-307698569 Lactuca sativa
Lsat_1_v5_gn_5_167061 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 307691877-307693876 Lactuca sativa
Lsat_1_v5_gn_5_167061 5.0kb upstream 5.0kb upstream 9693   true Lsat_1_v8_lg_5: 307693877-307703569 Lactuca sativa
Lsat_1_v5_gn_5_167061 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 307698570-307703569 Lactuca sativa
Lsat_1_v5_gn_5_167061 5.0kb downstream 5.0kb downstream 9693   true Lsat_1_v8_lg_5: 307688877-307698569 Lactuca sativa
Lsat_1_v5_gn_5_167061 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 307688877-307693876 Lactuca sativa
Lsat_1_v5_gn_5_167061 10.0kb upstream 10.0kb upstream 14693   true Lsat_1_v8_lg_5: 307693877-307708569 Lactuca sativa
Lsat_1_v5_gn_5_167061 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 307698570-307708569 Lactuca sativa
Lsat_1_v5_gn_5_167061 10.0kb downstream 10.0kb downstream 14693   true Lsat_1_v8_lg_5: 307683877-307698569 Lactuca sativa
Lsat_1_v5_gn_5_167061 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 307683877-307693876 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121476798 5263 Asterids View MSA
123740324 5271 Pentapetalae View MSA
122794495 5272 Eudicot View MSA
122046254 5273 Angiosperm View MSA
121349492 5274 Embryophyte View MSA
123427421 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain