Gene : Lsat_1_v5_gn_5_47521 L. sativa V8
Defline:  (1 of 2) K09494 - T-complex protein 1 subunit beta (CCT2) Genomic Order:  1207
Name:  ? Lsat_1_v5_gn_5_47521 Secondary Identifier:  ? PAC:38967913
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_47521 0.5kb upstream 0.5kb upstream 6878   true Lsat_1_v8_lg_5: 99943884-99950761 Lactuca sativa
Lsat_1_v5_gn_5_47521 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 99943884-99944383 Lactuca sativa
Lsat_1_v5_gn_5_47521 0.5kb downstream 0.5kb downstream 6878   true Lsat_1_v8_lg_5: 99944384-99951261 Lactuca sativa
Lsat_1_v5_gn_5_47521 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 99950762-99951261 Lactuca sativa
Lsat_1_v5_gn_5_47521 1.0kb upstream 1.0kb upstream 7378   true Lsat_1_v8_lg_5: 99943384-99950761 Lactuca sativa
Lsat_1_v5_gn_5_47521 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 99943384-99944383 Lactuca sativa
Lsat_1_v5_gn_5_47521 1.0kb downstream 1.0kb downstream 7378   true Lsat_1_v8_lg_5: 99944384-99951761 Lactuca sativa
Lsat_1_v5_gn_5_47521 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 99950762-99951761 Lactuca sativa
Lsat_1_v5_gn_5_47521 2.0kb upstream 2.0kb upstream 8378   true Lsat_1_v8_lg_5: 99942384-99950761 Lactuca sativa
Lsat_1_v5_gn_5_47521 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 99942384-99944383 Lactuca sativa
Lsat_1_v5_gn_5_47521 2.0kb downstream 2.0kb downstream 8378   true Lsat_1_v8_lg_5: 99944384-99952761 Lactuca sativa
Lsat_1_v5_gn_5_47521 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 99950762-99952761 Lactuca sativa
Lsat_1_v5_gn_5_47521 5.0kb upstream 5.0kb upstream 11378   true Lsat_1_v8_lg_5: 99939384-99950761 Lactuca sativa
Lsat_1_v5_gn_5_47521 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 99939384-99944383 Lactuca sativa
Lsat_1_v5_gn_5_47521 5.0kb downstream 5.0kb downstream 11378   true Lsat_1_v8_lg_5: 99944384-99955761 Lactuca sativa
Lsat_1_v5_gn_5_47521 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 99950762-99955761 Lactuca sativa
Lsat_1_v5_gn_5_47521 10.0kb upstream 10.0kb upstream 16378   true Lsat_1_v8_lg_5: 99934384-99950761 Lactuca sativa
Lsat_1_v5_gn_5_47521 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 99934384-99944383 Lactuca sativa
Lsat_1_v5_gn_5_47521 10.0kb downstream 10.0kb downstream 16378   true Lsat_1_v8_lg_5: 99944384-99960761 Lactuca sativa
Lsat_1_v5_gn_5_47521 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 99950762-99960761 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121445558 5263 Asterids Singleton cluster - no MSA
123747286 5271 Pentapetalae View MSA
122790745 5272 Eudicot View MSA
122042218 5273 Angiosperm View MSA
121346616 5274 Embryophyte View MSA
123426772 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain