Gene : Lsat_1_v5_gn_5_50541 L. sativa V8
Defline:  (1 of 4) K01662 - 1-deoxy-D-xylulose-5-phosphate synthase (dxs) Genomic Order:  1306
Name:  ? Lsat_1_v5_gn_5_50541 Secondary Identifier:  ? PAC:38968907
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-7560 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_50541 0.5kb upstream 0.5kb upstream 5021   true Lsat_1_v8_lg_5: 113428750-113433770 Lactuca sativa
Lsat_1_v5_gn_5_50541 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 113428750-113429249 Lactuca sativa
Lsat_1_v5_gn_5_50541 0.5kb downstream 0.5kb downstream 5021   true Lsat_1_v8_lg_5: 113429250-113434270 Lactuca sativa
Lsat_1_v5_gn_5_50541 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 113433771-113434270 Lactuca sativa
Lsat_1_v5_gn_5_50541 1.0kb upstream 1.0kb upstream 5521   true Lsat_1_v8_lg_5: 113428250-113433770 Lactuca sativa
Lsat_1_v5_gn_5_50541 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 113428250-113429249 Lactuca sativa
Lsat_1_v5_gn_5_50541 1.0kb downstream 1.0kb downstream 5521   true Lsat_1_v8_lg_5: 113429250-113434770 Lactuca sativa
Lsat_1_v5_gn_5_50541 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 113433771-113434770 Lactuca sativa
Lsat_1_v5_gn_5_50541 2.0kb upstream 2.0kb upstream 6521   true Lsat_1_v8_lg_5: 113427250-113433770 Lactuca sativa
Lsat_1_v5_gn_5_50541 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 113427250-113429249 Lactuca sativa
Lsat_1_v5_gn_5_50541 2.0kb downstream 2.0kb downstream 6521   true Lsat_1_v8_lg_5: 113429250-113435770 Lactuca sativa
Lsat_1_v5_gn_5_50541 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 113433771-113435770 Lactuca sativa
Lsat_1_v5_gn_5_50541 5.0kb upstream 5.0kb upstream 9521   true Lsat_1_v8_lg_5: 113424250-113433770 Lactuca sativa
Lsat_1_v5_gn_5_50541 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 113424250-113429249 Lactuca sativa
Lsat_1_v5_gn_5_50541 5.0kb downstream 5.0kb downstream 9521   true Lsat_1_v8_lg_5: 113429250-113438770 Lactuca sativa
Lsat_1_v5_gn_5_50541 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 113433771-113438770 Lactuca sativa
Lsat_1_v5_gn_5_50541 10.0kb upstream 10.0kb upstream 14521   true Lsat_1_v8_lg_5: 113419250-113433770 Lactuca sativa
Lsat_1_v5_gn_5_50541 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 113419250-113429249 Lactuca sativa
Lsat_1_v5_gn_5_50541 10.0kb downstream 10.0kb downstream 14521   true Lsat_1_v8_lg_5: 113429250-113443770 Lactuca sativa
Lsat_1_v5_gn_5_50541 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 113433771-113443770 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472797 5263 Asterids View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain