Gene : Lsat_1_v5_gn_5_50421 L. sativa V8
Defline:  (1 of 3) PTHR33370//PTHR33370:SF1 - FAMILY NOT NAMED // TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC Genomic Order:  1311
Name:  ? Lsat_1_v5_gn_5_50421 Secondary Identifier:  ? PAC:38970014
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_50421 0.5kb upstream 0.5kb upstream 1705   true Lsat_1_v8_lg_5: 113484033-113485737 Lactuca sativa
Lsat_1_v5_gn_5_50421 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 113484033-113484532 Lactuca sativa
Lsat_1_v5_gn_5_50421 0.5kb downstream 0.5kb downstream 1705   true Lsat_1_v8_lg_5: 113484533-113486237 Lactuca sativa
Lsat_1_v5_gn_5_50421 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 113485738-113486237 Lactuca sativa
Lsat_1_v5_gn_5_50421 1.0kb upstream 1.0kb upstream 2205   true Lsat_1_v8_lg_5: 113483533-113485737 Lactuca sativa
Lsat_1_v5_gn_5_50421 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 113483533-113484532 Lactuca sativa
Lsat_1_v5_gn_5_50421 1.0kb downstream 1.0kb downstream 2205   true Lsat_1_v8_lg_5: 113484533-113486737 Lactuca sativa
Lsat_1_v5_gn_5_50421 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 113485738-113486737 Lactuca sativa
Lsat_1_v5_gn_5_50421 2.0kb upstream 2.0kb upstream 3205   true Lsat_1_v8_lg_5: 113482533-113485737 Lactuca sativa
Lsat_1_v5_gn_5_50421 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 113482533-113484532 Lactuca sativa
Lsat_1_v5_gn_5_50421 2.0kb downstream 2.0kb downstream 3205   true Lsat_1_v8_lg_5: 113484533-113487737 Lactuca sativa
Lsat_1_v5_gn_5_50421 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 113485738-113487737 Lactuca sativa
Lsat_1_v5_gn_5_50421 5.0kb upstream 5.0kb upstream 6205   true Lsat_1_v8_lg_5: 113479533-113485737 Lactuca sativa
Lsat_1_v5_gn_5_50421 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 113479533-113484532 Lactuca sativa
Lsat_1_v5_gn_5_50421 5.0kb downstream 5.0kb downstream 6205   true Lsat_1_v8_lg_5: 113484533-113490737 Lactuca sativa
Lsat_1_v5_gn_5_50421 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 113485738-113490737 Lactuca sativa
Lsat_1_v5_gn_5_50421 10.0kb upstream 10.0kb upstream 11205   true Lsat_1_v8_lg_5: 113474533-113485737 Lactuca sativa
Lsat_1_v5_gn_5_50421 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 113474533-113484532 Lactuca sativa
Lsat_1_v5_gn_5_50421 10.0kb downstream 10.0kb downstream 11205   true Lsat_1_v8_lg_5: 113484533-113495737 Lactuca sativa
Lsat_1_v5_gn_5_50421 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 113485738-113495737 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121453882 5263 Asterids View MSA
123751156 5271 Pentapetalae View MSA
122793979 5272 Eudicot View MSA
122049746 5273 Angiosperm View MSA
121350914 5274 Embryophyte View MSA
123426853 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain