Gene : Lsat_1_v5_gn_5_53001 L. sativa V8
Defline:  (1 of 1) PTHR11777:SF7 - THREONYL AND ALANYL TRNA SYNTHETASE SECOND ADDITIONAL DOMAIN-CONTAINING PROTEIN Genomic Order:  1401
Name:  ? Lsat_1_v5_gn_5_53001 Secondary Identifier:  ? PAC:38964989
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa TRNA-CHARGING-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_53001 0.5kb upstream 0.5kb upstream 2617   true Lsat_1_v8_lg_5: 121974236-121976852 Lactuca sativa
Lsat_1_v5_gn_5_53001 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 121976353-121976852 Lactuca sativa
Lsat_1_v5_gn_5_53001 0.5kb downstream 0.5kb downstream 2617   true Lsat_1_v8_lg_5: 121973736-121976352 Lactuca sativa
Lsat_1_v5_gn_5_53001 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 121973736-121974235 Lactuca sativa
Lsat_1_v5_gn_5_53001 1.0kb upstream 1.0kb upstream 3117   true Lsat_1_v8_lg_5: 121974236-121977352 Lactuca sativa
Lsat_1_v5_gn_5_53001 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 121976353-121977352 Lactuca sativa
Lsat_1_v5_gn_5_53001 1.0kb downstream 1.0kb downstream 3117   true Lsat_1_v8_lg_5: 121973236-121976352 Lactuca sativa
Lsat_1_v5_gn_5_53001 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 121973236-121974235 Lactuca sativa
Lsat_1_v5_gn_5_53001 2.0kb upstream 2.0kb upstream 4117   true Lsat_1_v8_lg_5: 121974236-121978352 Lactuca sativa
Lsat_1_v5_gn_5_53001 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 121976353-121978352 Lactuca sativa
Lsat_1_v5_gn_5_53001 2.0kb downstream 2.0kb downstream 4117   true Lsat_1_v8_lg_5: 121972236-121976352 Lactuca sativa
Lsat_1_v5_gn_5_53001 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 121972236-121974235 Lactuca sativa
Lsat_1_v5_gn_5_53001 5.0kb upstream 5.0kb upstream 7117   true Lsat_1_v8_lg_5: 121974236-121981352 Lactuca sativa
Lsat_1_v5_gn_5_53001 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 121976353-121981352 Lactuca sativa
Lsat_1_v5_gn_5_53001 5.0kb downstream 5.0kb downstream 7117   true Lsat_1_v8_lg_5: 121969236-121976352 Lactuca sativa
Lsat_1_v5_gn_5_53001 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 121969236-121974235 Lactuca sativa
Lsat_1_v5_gn_5_53001 10.0kb upstream 10.0kb upstream 12117   true Lsat_1_v8_lg_5: 121974236-121986352 Lactuca sativa
Lsat_1_v5_gn_5_53001 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 121976353-121986352 Lactuca sativa
Lsat_1_v5_gn_5_53001 10.0kb downstream 10.0kb downstream 12117   true Lsat_1_v8_lg_5: 121964236-121976352 Lactuca sativa
Lsat_1_v5_gn_5_53001 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 121964236-121974235 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041267 5273 Angiosperm View MSA
121467205 5263 Asterids View MSA
123736898 5271 Pentapetalae View MSA
122790717 5272 Eudicot View MSA
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain