Gene : Lsat_1_v5_gn_5_25080 L. sativa V8
Defline:  (1 of 1) K08735 - DNA mismatch repair protein MSH2 (MSH2) Genomic Order:  699
Name:  ? Lsat_1_v5_gn_5_25080 Secondary Identifier:  ? PAC:38965111
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_25080 0.5kb upstream 0.5kb upstream 6789   true Lsat_1_v8_lg_5: 51794887-51801675 Lactuca sativa
Lsat_1_v5_gn_5_25080 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 51794887-51795386 Lactuca sativa
Lsat_1_v5_gn_5_25080 0.5kb downstream 0.5kb downstream 6789   true Lsat_1_v8_lg_5: 51795387-51802175 Lactuca sativa
Lsat_1_v5_gn_5_25080 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 51801676-51802175 Lactuca sativa
Lsat_1_v5_gn_5_25080 1.0kb upstream 1.0kb upstream 7289   true Lsat_1_v8_lg_5: 51794387-51801675 Lactuca sativa
Lsat_1_v5_gn_5_25080 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 51794387-51795386 Lactuca sativa
Lsat_1_v5_gn_5_25080 1.0kb downstream 1.0kb downstream 7289   true Lsat_1_v8_lg_5: 51795387-51802675 Lactuca sativa
Lsat_1_v5_gn_5_25080 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 51801676-51802675 Lactuca sativa
Lsat_1_v5_gn_5_25080 2.0kb upstream 2.0kb upstream 8289   true Lsat_1_v8_lg_5: 51793387-51801675 Lactuca sativa
Lsat_1_v5_gn_5_25080 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 51793387-51795386 Lactuca sativa
Lsat_1_v5_gn_5_25080 2.0kb downstream 2.0kb downstream 8289   true Lsat_1_v8_lg_5: 51795387-51803675 Lactuca sativa
Lsat_1_v5_gn_5_25080 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 51801676-51803675 Lactuca sativa
Lsat_1_v5_gn_5_25080 5.0kb upstream 5.0kb upstream 11289   true Lsat_1_v8_lg_5: 51790387-51801675 Lactuca sativa
Lsat_1_v5_gn_5_25080 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 51790387-51795386 Lactuca sativa
Lsat_1_v5_gn_5_25080 5.0kb downstream 5.0kb downstream 11289   true Lsat_1_v8_lg_5: 51795387-51806675 Lactuca sativa
Lsat_1_v5_gn_5_25080 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 51801676-51806675 Lactuca sativa
Lsat_1_v5_gn_5_25080 10.0kb upstream 10.0kb upstream 16289   true Lsat_1_v8_lg_5: 51785387-51801675 Lactuca sativa
Lsat_1_v5_gn_5_25080 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 51785387-51795386 Lactuca sativa
Lsat_1_v5_gn_5_25080 10.0kb downstream 10.0kb downstream 16289   true Lsat_1_v8_lg_5: 51795387-51811675 Lactuca sativa
Lsat_1_v5_gn_5_25080 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 51801676-51811675 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472185 5263 Asterids View MSA
123740546 5271 Pentapetalae View MSA
122786206 5272 Eudicot View MSA
122042672 5273 Angiosperm View MSA
121343804 5274 Embryophyte View MSA
123423885 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain