Gene : Lsat_1_v5_gn_5_30421 L. sativa V8
Defline:  (1 of 3) PTHR13301:SF33 - CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 1 [UDP-FORMING] Genomic Order:  867
Name:  ? Lsat_1_v5_gn_5_30421 Secondary Identifier:  ? PAC:38966863
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa PWY-1001 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_30421 0.5kb upstream 0.5kb upstream 6186   true Lsat_1_v8_lg_5: 66504243-66510428 Lactuca sativa
Lsat_1_v5_gn_5_30421 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 66509929-66510428 Lactuca sativa
Lsat_1_v5_gn_5_30421 0.5kb downstream 0.5kb downstream 6186   true Lsat_1_v8_lg_5: 66503743-66509928 Lactuca sativa
Lsat_1_v5_gn_5_30421 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 66503743-66504242 Lactuca sativa
Lsat_1_v5_gn_5_30421 1.0kb upstream 1.0kb upstream 6686   true Lsat_1_v8_lg_5: 66504243-66510928 Lactuca sativa
Lsat_1_v5_gn_5_30421 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 66509929-66510928 Lactuca sativa
Lsat_1_v5_gn_5_30421 1.0kb downstream 1.0kb downstream 6686   true Lsat_1_v8_lg_5: 66503243-66509928 Lactuca sativa
Lsat_1_v5_gn_5_30421 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 66503243-66504242 Lactuca sativa
Lsat_1_v5_gn_5_30421 2.0kb upstream 2.0kb upstream 7686   true Lsat_1_v8_lg_5: 66504243-66511928 Lactuca sativa
Lsat_1_v5_gn_5_30421 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 66509929-66511928 Lactuca sativa
Lsat_1_v5_gn_5_30421 2.0kb downstream 2.0kb downstream 7686   true Lsat_1_v8_lg_5: 66502243-66509928 Lactuca sativa
Lsat_1_v5_gn_5_30421 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 66502243-66504242 Lactuca sativa
Lsat_1_v5_gn_5_30421 5.0kb upstream 5.0kb upstream 10686   true Lsat_1_v8_lg_5: 66504243-66514928 Lactuca sativa
Lsat_1_v5_gn_5_30421 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 66509929-66514928 Lactuca sativa
Lsat_1_v5_gn_5_30421 5.0kb downstream 5.0kb downstream 10686   true Lsat_1_v8_lg_5: 66499243-66509928 Lactuca sativa
Lsat_1_v5_gn_5_30421 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 66499243-66504242 Lactuca sativa
Lsat_1_v5_gn_5_30421 10.0kb upstream 10.0kb upstream 15686   true Lsat_1_v8_lg_5: 66504243-66519928 Lactuca sativa
Lsat_1_v5_gn_5_30421 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 66509929-66519928 Lactuca sativa
Lsat_1_v5_gn_5_30421 10.0kb downstream 10.0kb downstream 15686   true Lsat_1_v8_lg_5: 66494243-66509928 Lactuca sativa
Lsat_1_v5_gn_5_30421 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 66494243-66504242 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121468311 5263 Asterids View MSA
123746424 5271 Pentapetalae View MSA
122793475 5272 Eudicot View MSA
122046929 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain