Gene : Lsat_1_v5_gn_5_36420 L. sativa V8
Defline:  (1 of 1) PTHR11946//PTHR11946:SF51 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // LEUCINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  1005
Name:  ? Lsat_1_v5_gn_5_36420 Secondary Identifier:  ? PAC:38967583
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa TRNA-CHARGING-PWY Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_36420 0.5kb upstream 0.5kb upstream 5616   true Lsat_1_v8_lg_5: 79038667-79044282 Lactuca sativa
Lsat_1_v5_gn_5_36420 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 79038667-79039166 Lactuca sativa
Lsat_1_v5_gn_5_36420 0.5kb downstream 0.5kb downstream 5616   true Lsat_1_v8_lg_5: 79039167-79044782 Lactuca sativa
Lsat_1_v5_gn_5_36420 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 79044283-79044782 Lactuca sativa
Lsat_1_v5_gn_5_36420 1.0kb upstream 1.0kb upstream 6116   true Lsat_1_v8_lg_5: 79038167-79044282 Lactuca sativa
Lsat_1_v5_gn_5_36420 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 79038167-79039166 Lactuca sativa
Lsat_1_v5_gn_5_36420 1.0kb downstream 1.0kb downstream 6116   true Lsat_1_v8_lg_5: 79039167-79045282 Lactuca sativa
Lsat_1_v5_gn_5_36420 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 79044283-79045282 Lactuca sativa
Lsat_1_v5_gn_5_36420 2.0kb upstream 2.0kb upstream 7116   true Lsat_1_v8_lg_5: 79037167-79044282 Lactuca sativa
Lsat_1_v5_gn_5_36420 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 79037167-79039166 Lactuca sativa
Lsat_1_v5_gn_5_36420 2.0kb downstream 2.0kb downstream 7116   true Lsat_1_v8_lg_5: 79039167-79046282 Lactuca sativa
Lsat_1_v5_gn_5_36420 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 79044283-79046282 Lactuca sativa
Lsat_1_v5_gn_5_36420 5.0kb upstream 5.0kb upstream 10116   true Lsat_1_v8_lg_5: 79034167-79044282 Lactuca sativa
Lsat_1_v5_gn_5_36420 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 79034167-79039166 Lactuca sativa
Lsat_1_v5_gn_5_36420 5.0kb downstream 5.0kb downstream 10116   true Lsat_1_v8_lg_5: 79039167-79049282 Lactuca sativa
Lsat_1_v5_gn_5_36420 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 79044283-79049282 Lactuca sativa
Lsat_1_v5_gn_5_36420 10.0kb upstream 10.0kb upstream 15116   true Lsat_1_v8_lg_5: 79029167-79044282 Lactuca sativa
Lsat_1_v5_gn_5_36420 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 79029167-79039166 Lactuca sativa
Lsat_1_v5_gn_5_36420 10.0kb downstream 10.0kb downstream 15116   true Lsat_1_v8_lg_5: 79039167-79054282 Lactuca sativa
Lsat_1_v5_gn_5_36420 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 79044283-79054282 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121475835 5263 Asterids View MSA
123749882 5271 Pentapetalae View MSA
122789988 5272 Eudicot View MSA
122047618 5273 Angiosperm View MSA
121344832 5274 Embryophyte View MSA
123424388 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain