Gene : Lsat_1_v5_gn_5_80001 L. sativa V8
Defline:  (1 of 200) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2138
Name:  ? Lsat_1_v5_gn_5_80001 Secondary Identifier:  ? PAC:38971578
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_80001 0.5kb upstream 0.5kb upstream 3291   true Lsat_1_v8_lg_5: 182487041-182490331 Lactuca sativa
Lsat_1_v5_gn_5_80001 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 182487041-182487540 Lactuca sativa
Lsat_1_v5_gn_5_80001 0.5kb downstream 0.5kb downstream 3291   true Lsat_1_v8_lg_5: 182487541-182490831 Lactuca sativa
Lsat_1_v5_gn_5_80001 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 182490332-182490831 Lactuca sativa
Lsat_1_v5_gn_5_80001 1.0kb upstream 1.0kb upstream 3791   true Lsat_1_v8_lg_5: 182486541-182490331 Lactuca sativa
Lsat_1_v5_gn_5_80001 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 182486541-182487540 Lactuca sativa
Lsat_1_v5_gn_5_80001 1.0kb downstream 1.0kb downstream 3791   true Lsat_1_v8_lg_5: 182487541-182491331 Lactuca sativa
Lsat_1_v5_gn_5_80001 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 182490332-182491331 Lactuca sativa
Lsat_1_v5_gn_5_80001 2.0kb upstream 2.0kb upstream 4791   true Lsat_1_v8_lg_5: 182485541-182490331 Lactuca sativa
Lsat_1_v5_gn_5_80001 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 182485541-182487540 Lactuca sativa
Lsat_1_v5_gn_5_80001 2.0kb downstream 2.0kb downstream 4791   true Lsat_1_v8_lg_5: 182487541-182492331 Lactuca sativa
Lsat_1_v5_gn_5_80001 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 182490332-182492331 Lactuca sativa
Lsat_1_v5_gn_5_80001 5.0kb upstream 5.0kb upstream 7791   true Lsat_1_v8_lg_5: 182482541-182490331 Lactuca sativa
Lsat_1_v5_gn_5_80001 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 182482541-182487540 Lactuca sativa
Lsat_1_v5_gn_5_80001 5.0kb downstream 5.0kb downstream 7791   true Lsat_1_v8_lg_5: 182487541-182495331 Lactuca sativa
Lsat_1_v5_gn_5_80001 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 182490332-182495331 Lactuca sativa
Lsat_1_v5_gn_5_80001 10.0kb upstream 10.0kb upstream 12791   true Lsat_1_v8_lg_5: 182477541-182490331 Lactuca sativa
Lsat_1_v5_gn_5_80001 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 182477541-182487540 Lactuca sativa
Lsat_1_v5_gn_5_80001 10.0kb downstream 10.0kb downstream 12791   true Lsat_1_v8_lg_5: 182487541-182500331 Lactuca sativa
Lsat_1_v5_gn_5_80001 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 182490332-182500331 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121466816 5263 Asterids View MSA
123744413 5271 Pentapetalae View MSA
122789799 5272 Eudicot View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain