Gene : Lsat_1_v5_gn_5_81601 L. sativa V8
Defline:  (1 of 16) PF02309//PF02362//PF06507 - AUX/IAA family (AUX_IAA) // B3 DNA binding domain (B3) // Auxin response factor (Auxin_resp) Genomic Order:  2113
Name:  ? Lsat_1_v5_gn_5_81601 Secondary Identifier:  ? PAC:38967840
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_81601 0.5kb upstream 0.5kb upstream 8472   true Lsat_1_v8_lg_5: 179930027-179938498 Lactuca sativa
Lsat_1_v5_gn_5_81601 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 179937999-179938498 Lactuca sativa
Lsat_1_v5_gn_5_81601 0.5kb downstream 0.5kb downstream 8472   true Lsat_1_v8_lg_5: 179929527-179937998 Lactuca sativa
Lsat_1_v5_gn_5_81601 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 179929527-179930026 Lactuca sativa
Lsat_1_v5_gn_5_81601 1.0kb upstream 1.0kb upstream 8972   true Lsat_1_v8_lg_5: 179930027-179938998 Lactuca sativa
Lsat_1_v5_gn_5_81601 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 179937999-179938998 Lactuca sativa
Lsat_1_v5_gn_5_81601 1.0kb downstream 1.0kb downstream 8972   true Lsat_1_v8_lg_5: 179929027-179937998 Lactuca sativa
Lsat_1_v5_gn_5_81601 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 179929027-179930026 Lactuca sativa
Lsat_1_v5_gn_5_81601 2.0kb upstream 2.0kb upstream 9972   true Lsat_1_v8_lg_5: 179930027-179939998 Lactuca sativa
Lsat_1_v5_gn_5_81601 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 179937999-179939998 Lactuca sativa
Lsat_1_v5_gn_5_81601 2.0kb downstream 2.0kb downstream 9972   true Lsat_1_v8_lg_5: 179928027-179937998 Lactuca sativa
Lsat_1_v5_gn_5_81601 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 179928027-179930026 Lactuca sativa
Lsat_1_v5_gn_5_81601 5.0kb upstream 5.0kb upstream 12972   true Lsat_1_v8_lg_5: 179930027-179942998 Lactuca sativa
Lsat_1_v5_gn_5_81601 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 179937999-179942998 Lactuca sativa
Lsat_1_v5_gn_5_81601 5.0kb downstream 5.0kb downstream 12972   true Lsat_1_v8_lg_5: 179925027-179937998 Lactuca sativa
Lsat_1_v5_gn_5_81601 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 179925027-179930026 Lactuca sativa
Lsat_1_v5_gn_5_81601 10.0kb upstream 10.0kb upstream 17972   true Lsat_1_v8_lg_5: 179930027-179947998 Lactuca sativa
Lsat_1_v5_gn_5_81601 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 179937999-179947998 Lactuca sativa
Lsat_1_v5_gn_5_81601 10.0kb downstream 10.0kb downstream 17972   true Lsat_1_v8_lg_5: 179920027-179937998 Lactuca sativa
Lsat_1_v5_gn_5_81601 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 179920027-179930026 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121476719 5263 Asterids View MSA
123741284 5271 Pentapetalae View MSA
122791344 5272 Eudicot View MSA
122042731 5273 Angiosperm View MSA
121351367 5274 Embryophyte View MSA
123382140 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain