Gene : Lsat_1_v5_gn_5_88220 L. sativa V8
Defline:  (1 of 2) K18798 - protein AFG1 (AFG1, LACE1) Genomic Order:  2284
Name:  ? Lsat_1_v5_gn_5_88220 Secondary Identifier:  ? PAC:38964840
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Lsativa ANAEROFRUCAT-PWY Lactuca sativa pathologic  
Lsativa ANAGLYCOLYSIS-PWY Lactuca sativa pathologic  
Lsativa GLUCOSE1PMETAB-PWY Lactuca sativa pathologic  
Lsativa PWY-621 Lactuca sativa pathologic  
Lsativa PWY-7238 Lactuca sativa pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_88220 0.5kb upstream 0.5kb upstream 4891   true Lsat_1_v8_lg_5: 196608056-196612946 Lactuca sativa
Lsat_1_v5_gn_5_88220 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 196612447-196612946 Lactuca sativa
Lsat_1_v5_gn_5_88220 0.5kb downstream 0.5kb downstream 4891   true Lsat_1_v8_lg_5: 196607556-196612446 Lactuca sativa
Lsat_1_v5_gn_5_88220 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 196607556-196608055 Lactuca sativa
Lsat_1_v5_gn_5_88220 1.0kb upstream 1.0kb upstream 5391   true Lsat_1_v8_lg_5: 196608056-196613446 Lactuca sativa
Lsat_1_v5_gn_5_88220 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 196612447-196613446 Lactuca sativa
Lsat_1_v5_gn_5_88220 1.0kb downstream 1.0kb downstream 5391   true Lsat_1_v8_lg_5: 196607056-196612446 Lactuca sativa
Lsat_1_v5_gn_5_88220 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 196607056-196608055 Lactuca sativa
Lsat_1_v5_gn_5_88220 2.0kb upstream 2.0kb upstream 6391   true Lsat_1_v8_lg_5: 196608056-196614446 Lactuca sativa
Lsat_1_v5_gn_5_88220 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 196612447-196614446 Lactuca sativa
Lsat_1_v5_gn_5_88220 2.0kb downstream 2.0kb downstream 6391   true Lsat_1_v8_lg_5: 196606056-196612446 Lactuca sativa
Lsat_1_v5_gn_5_88220 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 196606056-196608055 Lactuca sativa
Lsat_1_v5_gn_5_88220 5.0kb upstream 5.0kb upstream 9391   true Lsat_1_v8_lg_5: 196608056-196617446 Lactuca sativa
Lsat_1_v5_gn_5_88220 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 196612447-196617446 Lactuca sativa
Lsat_1_v5_gn_5_88220 5.0kb downstream 5.0kb downstream 9391   true Lsat_1_v8_lg_5: 196603056-196612446 Lactuca sativa
Lsat_1_v5_gn_5_88220 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 196603056-196608055 Lactuca sativa
Lsat_1_v5_gn_5_88220 10.0kb upstream 10.0kb upstream 14391   true Lsat_1_v8_lg_5: 196608056-196622446 Lactuca sativa
Lsat_1_v5_gn_5_88220 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 196612447-196622446 Lactuca sativa
Lsat_1_v5_gn_5_88220 10.0kb downstream 10.0kb downstream 14391   true Lsat_1_v8_lg_5: 196598056-196612446 Lactuca sativa
Lsat_1_v5_gn_5_88220 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 196598056-196608055 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121470841 5263 Asterids View MSA
123752091 5271 Pentapetalae View MSA
122793026 5272 Eudicot View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain