Gene : Lsat_1_v5_gn_5_97621 L. sativa V8
Defline:  (1 of 1) PF00027//PF00520//PF07885//PF11834//PF12796//PF13857 - Cyclic nucleotide-binding domain (cNMP_binding) // Ion transport protein (Ion_trans) // Ion channel (Ion_trans_2) // KHA, dimerisation domain of potassium ion channel (KHA) // Ankyrin repeats (3 copies) (Ank_2) // Ankyrin repeats (many copies) (Ank_5) Genomic Order:  2562
Name:  ? Lsat_1_v5_gn_5_97621 Secondary Identifier:  ? PAC:38966066
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Lsat_1_v5_gn_5_97621 0.5kb upstream 0.5kb upstream 7966   true Lsat_1_v8_lg_5: 213576485-213584450 Lactuca sativa
Lsat_1_v5_gn_5_97621 0.5kb upstream 0.5kb upstream 500   false Lsat_1_v8_lg_5: 213576485-213576984 Lactuca sativa
Lsat_1_v5_gn_5_97621 0.5kb downstream 0.5kb downstream 7966   true Lsat_1_v8_lg_5: 213576985-213584950 Lactuca sativa
Lsat_1_v5_gn_5_97621 0.5kb downstream 0.5kb downstream 500   false Lsat_1_v8_lg_5: 213584451-213584950 Lactuca sativa
Lsat_1_v5_gn_5_97621 1.0kb upstream 1.0kb upstream 8466   true Lsat_1_v8_lg_5: 213575985-213584450 Lactuca sativa
Lsat_1_v5_gn_5_97621 1.0kb upstream 1.0kb upstream 1000   false Lsat_1_v8_lg_5: 213575985-213576984 Lactuca sativa
Lsat_1_v5_gn_5_97621 1.0kb downstream 1.0kb downstream 8466   true Lsat_1_v8_lg_5: 213576985-213585450 Lactuca sativa
Lsat_1_v5_gn_5_97621 1.0kb downstream 1.0kb downstream 1000   false Lsat_1_v8_lg_5: 213584451-213585450 Lactuca sativa
Lsat_1_v5_gn_5_97621 2.0kb upstream 2.0kb upstream 9466   true Lsat_1_v8_lg_5: 213574985-213584450 Lactuca sativa
Lsat_1_v5_gn_5_97621 2.0kb upstream 2.0kb upstream 2000   false Lsat_1_v8_lg_5: 213574985-213576984 Lactuca sativa
Lsat_1_v5_gn_5_97621 2.0kb downstream 2.0kb downstream 9466   true Lsat_1_v8_lg_5: 213576985-213586450 Lactuca sativa
Lsat_1_v5_gn_5_97621 2.0kb downstream 2.0kb downstream 2000   false Lsat_1_v8_lg_5: 213584451-213586450 Lactuca sativa
Lsat_1_v5_gn_5_97621 5.0kb upstream 5.0kb upstream 12466   true Lsat_1_v8_lg_5: 213571985-213584450 Lactuca sativa
Lsat_1_v5_gn_5_97621 5.0kb upstream 5.0kb upstream 5000   false Lsat_1_v8_lg_5: 213571985-213576984 Lactuca sativa
Lsat_1_v5_gn_5_97621 5.0kb downstream 5.0kb downstream 12466   true Lsat_1_v8_lg_5: 213576985-213589450 Lactuca sativa
Lsat_1_v5_gn_5_97621 5.0kb downstream 5.0kb downstream 5000   false Lsat_1_v8_lg_5: 213584451-213589450 Lactuca sativa
Lsat_1_v5_gn_5_97621 10.0kb upstream 10.0kb upstream 17466   true Lsat_1_v8_lg_5: 213566985-213584450 Lactuca sativa
Lsat_1_v5_gn_5_97621 10.0kb upstream 10.0kb upstream 10000   false Lsat_1_v8_lg_5: 213566985-213576984 Lactuca sativa
Lsat_1_v5_gn_5_97621 10.0kb downstream 10.0kb downstream 17466   true Lsat_1_v8_lg_5: 213576985-213594450 Lactuca sativa
Lsat_1_v5_gn_5_97621 10.0kb downstream 10.0kb downstream 10000   false Lsat_1_v8_lg_5: 213584451-213594450 Lactuca sativa

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121476320 5263 Asterids View MSA
123743419 5271 Pentapetalae View MSA
122788251 5272 Eudicot View MSA
122043256 5273 Angiosperm View MSA
121350921 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain